Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 20122 | 0.68 | 0.557374 |
Target: 5'- aCACCGU--CGUCGAAUgccacgccuucggggGCCUGGAAu -3' miRNA: 3'- aGUGGCGucGCAGCUUG---------------UGGACCUUc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 19281 | 0.69 | 0.520234 |
Target: 5'- aUCGCCGUagaacAGCGUgGu-CGCCUGGGu- -3' miRNA: 3'- -AGUGGCG-----UCGCAgCuuGUGGACCUuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 18902 | 0.66 | 0.698414 |
Target: 5'- -gACCGCGuGCGc----CGCCUGGAAGg -3' miRNA: 3'- agUGGCGU-CGCagcuuGUGGACCUUC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 17883 | 0.66 | 0.693981 |
Target: 5'- aUCGCCGCGcuGCG-CGAccacgcggucaucCACCUGGAc- -3' miRNA: 3'- -AGUGGCGU--CGCaGCUu------------GUGGACCUuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 16437 | 0.7 | 0.471638 |
Target: 5'- aUCGCCgGCGGCGUUGAACACggcgucguagaucGGggGc -3' miRNA: 3'- -AGUGG-CGUCGCAGCUUGUGga-----------CCuuC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 14902 | 0.66 | 0.698414 |
Target: 5'- gUCugCGCGGCGaUCu-GCugCUGGccGg -3' miRNA: 3'- -AGugGCGUCGC-AGcuUGugGACCuuC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 14039 | 0.73 | 0.320322 |
Target: 5'- gCGCCGcCGGCGUCGAacuggaACACCUcgccaaGGAAa -3' miRNA: 3'- aGUGGC-GUCGCAGCU------UGUGGA------CCUUc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 13466 | 0.71 | 0.371237 |
Target: 5'- -gGgCGCGGUGUCGGGCaugACCUGGgcGa -3' miRNA: 3'- agUgGCGUCGCAGCUUG---UGGACCuuC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 12977 | 0.67 | 0.631215 |
Target: 5'- gUCGCCuGguGCcagGAGCACCUGGGc- -3' miRNA: 3'- -AGUGG-CguCGcagCUUGUGGACCUuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 9813 | 0.66 | 0.676159 |
Target: 5'- -gACCGCGGCGUCGcGGC-CCUuGAc- -3' miRNA: 3'- agUGGCGUCGCAGC-UUGuGGAcCUuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 7996 | 0.66 | 0.687314 |
Target: 5'- gCACCaCGGCGUCGGACGugccCUUGGc-- -3' miRNA: 3'- aGUGGcGUCGCAGCUUGU----GGACCuuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 7620 | 0.68 | 0.541977 |
Target: 5'- gUCG-CGCAGCGcCGGACACgUGGc-- -3' miRNA: 3'- -AGUgGCGUCGCaGCUUGUGgACCuuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 6627 | 0.67 | 0.642477 |
Target: 5'- cCGCCGcCAGCuUCGcGCGCUUGGccGg -3' miRNA: 3'- aGUGGC-GUCGcAGCuUGUGGACCuuC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 6021 | 0.7 | 0.457304 |
Target: 5'- uUCGCCG--GUGUUGAACACCUuGAAGu -3' miRNA: 3'- -AGUGGCguCGCAGCUUGUGGAcCUUC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 5472 | 0.71 | 0.380242 |
Target: 5'- aCGCCGCGGuCGUUGAugGUCUGGucGAGg -3' miRNA: 3'- aGUGGCGUC-GCAGCUugUGGACC--UUC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 5390 | 0.66 | 0.687314 |
Target: 5'- gUCACUGguGCGcgccgCGAGCACCUu---- -3' miRNA: 3'- -AGUGGCguCGCa----GCUUGUGGAccuuc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 5023 | 0.66 | 0.66496 |
Target: 5'- aUUACCGacuacuGCGUUGAuauuCGCCUGGuuGg -3' miRNA: 3'- -AGUGGCgu----CGCAGCUu---GUGGACCuuC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 4123 | 0.7 | 0.44721 |
Target: 5'- gCGCUGCAGCGUUGcuucccGGCGCauagUGGAAGc -3' miRNA: 3'- aGUGGCGUCGCAGC------UUGUGg---ACCUUC- -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 3763 | 0.66 | 0.668323 |
Target: 5'- cCGCCGCuggacguAGCcUCGGucgugccgaaagccaGCGCCUGGAAu -3' miRNA: 3'- aGUGGCG-------UCGcAGCU---------------UGUGGACCUUc -5' |
|||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 2839 | 0.66 | 0.66496 |
Target: 5'- cCACgCGCAGCGgCGccAGCACCaGcGAGGg -3' miRNA: 3'- aGUG-GCGUCGCaGC--UUGUGGaC-CUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home