miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 17775 0.68 0.420438
Target:  5'- gGGCGCGacaaCAcCAUCCugGCCCGc-- -3'
miRNA:   3'- gCCGUGCag--GU-GUAGGugCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 39536 0.66 0.553776
Target:  5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3'
miRNA:   3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 23164 0.67 0.510974
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 25202 0.69 0.410981
Target:  5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3'
miRNA:   3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5'
26540 3' -56.7 NC_005357.1 + 32821 0.66 0.586562
Target:  5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3'
miRNA:   3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13011 0.69 0.410981
Target:  5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3'
miRNA:   3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 31844 0.69 0.383419
Target:  5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3'
miRNA:   3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 29419 0.71 0.293324
Target:  5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3'
miRNA:   3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 11214 0.66 0.564652
Target:  5'- cCGcGCAUGaccgCCACGUucccgcCCACGCCCAc-- -3'
miRNA:   3'- -GC-CGUGCa---GGUGUA------GGUGCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 8053 0.66 0.564652
Target:  5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3'
miRNA:   3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 13652 0.68 0.456536
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26540 3' -56.7 NC_005357.1 + 5531 0.68 0.420438
Target:  5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3'
miRNA:   3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 6879 0.69 0.374508
Target:  5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3'
miRNA:   3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 27842 0.7 0.365738
Target:  5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3'
miRNA:   3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 1291 0.71 0.278834
Target:  5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3'
miRNA:   3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 28201 0.67 0.521556
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5'
26540 3' -56.7 NC_005357.1 + 1113 0.67 0.521556
Target:  5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3'
miRNA:   3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 21146 0.67 0.521556
Target:  5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3'
miRNA:   3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5'
26540 3' -56.7 NC_005357.1 + 1461 0.67 0.521556
Target:  5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3'
miRNA:   3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18846 0.67 0.536509
Target:  5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3'
miRNA:   3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.