Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26540 | 3' | -56.7 | NC_005357.1 | + | 39684 | 0.71 | 0.293324 |
Target: 5'- uCGGCACGcCCgaGCAgcgccgggCCGCGCUCAAGc -3' miRNA: 3'- -GCCGUGCaGG--UGUa-------GGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 39536 | 0.66 | 0.553776 |
Target: 5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3' miRNA: 3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 38717 | 0.74 | 0.200406 |
Target: 5'- aCGGCACGggcgCCACGagcgcguggaacaucUUCACGUCCAAGu -3' miRNA: 3'- -GCCGUGCa---GGUGU---------------AGGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 38660 | 0.67 | 0.532221 |
Target: 5'- uCGGCACGaCCGaggCUACGUCCAGc- -3' miRNA: 3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 37899 | 0.66 | 0.575584 |
Target: 5'- gCGGCACGaCCGCccagcacgCCACGUCaCGGGc -3' miRNA: 3'- -GCCGUGCaGGUGua------GGUGCGG-GUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 37002 | 0.67 | 0.510974 |
Target: 5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3' miRNA: 3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 33211 | 0.68 | 0.430025 |
Target: 5'- gGGCGCG-CCGCAgaacgugcgCCGCGCcgCCGAGc -3' miRNA: 3'- gCCGUGCaGGUGUa--------GGUGCG--GGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 33091 | 0.7 | 0.348629 |
Target: 5'- gCGGCG-GcCUACAUCCuCGCCCAuGAa -3' miRNA: 3'- -GCCGUgCaGGUGUAGGuGCGGGUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 32821 | 0.66 | 0.586562 |
Target: 5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3' miRNA: 3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 32327 | 0.71 | 0.31615 |
Target: 5'- aGGCcgGCGUCCcgACAaCCGcCGCCCAGGu -3' miRNA: 3'- gCCG--UGCAGG--UGUaGGU-GCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 31844 | 0.69 | 0.383419 |
Target: 5'- aGGCuGCGcgCCugGguaCUACGCCCGAGGc -3' miRNA: 3'- gCCG-UGCa-GGugUa--GGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 30147 | 0.73 | 0.220627 |
Target: 5'- cCGGCACGcugggCCAgCAaCC-CGCCCAGGAc -3' miRNA: 3'- -GCCGUGCa----GGU-GUaGGuGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29570 | 0.67 | 0.479796 |
Target: 5'- gGGUaucGCGUCagguCggCCGCGCCCAGGc -3' miRNA: 3'- gCCG---UGCAGgu--GuaGGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29482 | 0.7 | 0.348629 |
Target: 5'- -cGCGCGa--ACAUCC-CGCCCGAGAa -3' miRNA: 3'- gcCGUGCaggUGUAGGuGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 29419 | 0.71 | 0.293324 |
Target: 5'- gGGCGCGUugcccacgcgcUCGCAcgUCGCGCCCAGGu -3' miRNA: 3'- gCCGUGCA-----------GGUGUa-GGUGCGGGUUCu -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28952 | 0.72 | 0.258176 |
Target: 5'- uCGGCAuCGcCCAgGUcaugcccgacaCCGCGCCCGAGGc -3' miRNA: 3'- -GCCGU-GCaGGUgUA-----------GGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28911 | 0.7 | 0.348629 |
Target: 5'- uCGGCGCGgacggcaaaCCGCuuaCCuCGCCCAAGGc -3' miRNA: 3'- -GCCGUGCa--------GGUGua-GGuGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28452 | 0.66 | 0.550525 |
Target: 5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3' miRNA: 3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28201 | 0.67 | 0.521556 |
Target: 5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3' miRNA: 3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5' |
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26540 | 3' | -56.7 | NC_005357.1 | + | 28017 | 0.67 | 0.479796 |
Target: 5'- aGGCGCG-CCugG-CgACGCCCAGc- -3' miRNA: 3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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