miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 5' -60 NC_005357.1 + 25581 0.66 0.425943
Target:  5'- ---gUUGuACGcCGCGGUCuGCGGCCc -3'
miRNA:   3'- gaagAAC-UGCcGCGCCAGcCGCCGGa -5'
26540 5' -60 NC_005357.1 + 22063 0.66 0.407396
Target:  5'- --gCUUGcuCGGguCGCGGUCGGCGcGCg- -3'
miRNA:   3'- gaaGAACu-GCC--GCGCCAGCCGC-CGga -5'
26540 5' -60 NC_005357.1 + 38268 0.66 0.407396
Target:  5'- -cUCgaccACGGCGCgcaaGGUgGGCGGCUUc -3'
miRNA:   3'- gaAGaac-UGCCGCG----CCAgCCGCCGGA- -5'
26540 5' -60 NC_005357.1 + 31200 0.66 0.407396
Target:  5'- --gCUaGugGGCGUGGgcgggaacgUGGCGGUCa -3'
miRNA:   3'- gaaGAaCugCCGCGCCa--------GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 28936 0.66 0.398314
Target:  5'- -cUCgcccaaGGCGCGGUCGGCaucGCCc -3'
miRNA:   3'- gaAGaacug-CCGCGCCAGCCGc--CGGa -5'
26540 5' -60 NC_005357.1 + 20209 0.66 0.398314
Target:  5'- -gUCUUGGCaGCgcccGCGGcCGGCuguuGGCCUu -3'
miRNA:   3'- gaAGAACUGcCG----CGCCaGCCG----CCGGA- -5'
26540 5' -60 NC_005357.1 + 31900 0.66 0.397413
Target:  5'- ----gUGGCGGCggaaagcGUGGcCGGCGGUCa -3'
miRNA:   3'- gaagaACUGCCG-------CGCCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 13867 0.66 0.380545
Target:  5'- -----cGACGuGCGCgccgcgauGGcCGGCGGCCg -3'
miRNA:   3'- gaagaaCUGC-CGCG--------CCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 10053 0.67 0.371861
Target:  5'- gCUUCcugcugGGCGGC-CGGggccUCGGCGGCg- -3'
miRNA:   3'- -GAAGaa----CUGCCGcGCC----AGCCGCCGga -5'
26540 5' -60 NC_005357.1 + 17089 0.67 0.371861
Target:  5'- -----aGcCGGCGCGGuucUCGGCcgGGCCUu -3'
miRNA:   3'- gaagaaCuGCCGCGCC---AGCCG--CCGGA- -5'
26540 5' -60 NC_005357.1 + 14816 0.67 0.363313
Target:  5'- --cCUcGGCGGCGCugccuucgcccaGGUCgaugccguuGGCGGCCa -3'
miRNA:   3'- gaaGAaCUGCCGCG------------CCAG---------CCGCCGGa -5'
26540 5' -60 NC_005357.1 + 36041 0.67 0.354903
Target:  5'- -----cGAgGGCGCcG-CGGCGGCCg -3'
miRNA:   3'- gaagaaCUgCCGCGcCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 28615 0.67 0.34663
Target:  5'- --cCUUGAaccgGGCGCGGaugaGGCcGGCCa -3'
miRNA:   3'- gaaGAACUg---CCGCGCCag--CCG-CCGGa -5'
26540 5' -60 NC_005357.1 + 18033 0.67 0.330503
Target:  5'- gUUCUUGuCGGCG-GGcugcUUGGgGGCCUu -3'
miRNA:   3'- gAAGAACuGCCGCgCC----AGCCgCCGGA- -5'
26540 5' -60 NC_005357.1 + 1095 0.68 0.322649
Target:  5'- aCUUCaUGuuGGCgGCGGUaGGCGGCa- -3'
miRNA:   3'- -GAAGaACugCCG-CGCCAgCCGCCGga -5'
26540 5' -60 NC_005357.1 + 41738 0.68 0.314935
Target:  5'- -aUCUUgGGCGGCcCGGcCGGCGccGCCg -3'
miRNA:   3'- gaAGAA-CUGCCGcGCCaGCCGC--CGGa -5'
26540 5' -60 NC_005357.1 + 1344 0.68 0.314935
Target:  5'- -----aGGaaGcCGUGGUCGGCGGCCUu -3'
miRNA:   3'- gaagaaCUgcC-GCGCCAGCCGCCGGA- -5'
26540 5' -60 NC_005357.1 + 8204 0.68 0.307362
Target:  5'- -aUCgcgcACGGCcucguagucgcGCuGGUCGGCGGCCg -3'
miRNA:   3'- gaAGaac-UGCCG-----------CG-CCAGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 26358 0.68 0.292634
Target:  5'- -aUCU--ACGGCGCcGcgcgCGGCGGCCa -3'
miRNA:   3'- gaAGAacUGCCGCGcCa---GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 9330 0.68 0.292634
Target:  5'- -----cGuCGGCGCGGcgggCGGCGGCa- -3'
miRNA:   3'- gaagaaCuGCCGCGCCa---GCCGCCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.