Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26542 | 3' | -54.8 | NC_005357.1 | + | 34863 | 0.67 | 0.533818 |
Target: 5'- cGUGGaCGUGUCCAagccgGUGGCGCcGCggaUCg -3' miRNA: 3'- aCAUC-GCGCGGGU-----UACUGCGaCGa--AG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 8176 | 0.67 | 0.533818 |
Target: 5'- ---cGUGCGCCCg--GAUGCUGCc-- -3' miRNA: 3'- acauCGCGCGGGuuaCUGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 4789 | 0.67 | 0.544917 |
Target: 5'- ----cUGCGCCCAGcacgccggcUGGCGCUGCg-- -3' miRNA: 3'- acaucGCGCGGGUU---------ACUGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 12745 | 0.67 | 0.544917 |
Target: 5'- gGUGcCGCGCCCAGacgcuUGGCGC-GCUc- -3' miRNA: 3'- aCAUcGCGCGGGUU-----ACUGCGaCGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 1655 | 0.66 | 0.601341 |
Target: 5'- gGUcuGCGCGUCCuguuugcgcGUGAUGCUGCcgCg -3' miRNA: 3'- aCAu-CGCGCGGGu--------UACUGCGACGaaG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 7252 | 0.66 | 0.612749 |
Target: 5'- aUGUcGGC-CGCCCAGgucuUGAacUGCUGCUUg -3' miRNA: 3'- -ACA-UCGcGCGGGUU----ACU--GCGACGAAg -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 2100 | 1.11 | 0.000482 |
Target: 5'- aUGUAGCGCGCCCAAUGACGCUGCUUCa -3' miRNA: 3'- -ACAUCGCGCGGGUUACUGCGACGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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