miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 3' -54.8 NC_005357.1 + 25092 0.68 0.521705
Target:  5'- --cAGCGCGCCCGGcGcCGUgggauacagcgggUGCUUCu -3'
miRNA:   3'- acaUCGCGCGGGUUaCuGCG-------------ACGAAG- -5'
26542 3' -54.8 NC_005357.1 + 25135 0.76 0.171747
Target:  5'- aUGgauGCGCGCCCGcgG-CGCcgGCUUCg -3'
miRNA:   3'- -ACau-CGCGCGGGUuaCuGCGa-CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 27293 0.68 0.522802
Target:  5'- ---cGCGCGCCU--UGGCGaagGCUUCc -3'
miRNA:   3'- acauCGCGCGGGuuACUGCga-CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 28017 0.75 0.197578
Target:  5'- --aGGCGCGCCUGGcGACGCccaGCUUCg -3'
miRNA:   3'- acaUCGCGCGGGUUaCUGCGa--CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 32688 0.68 0.511874
Target:  5'- --aAGCGCGCCCAccacGAgcaguucgccCGCgGCUUCg -3'
miRNA:   3'- acaUCGCGCGGGUua--CU----------GCGaCGAAG- -5'
26542 3' -54.8 NC_005357.1 + 34863 0.67 0.533818
Target:  5'- cGUGGaCGUGUCCAagccgGUGGCGCcGCggaUCg -3'
miRNA:   3'- aCAUC-GCGCGGGU-----UACUGCGaCGa--AG- -5'
26542 3' -54.8 NC_005357.1 + 42139 0.68 0.501041
Target:  5'- --gAGCGCGCCUuccGGCGCaGCUa- -3'
miRNA:   3'- acaUCGCGCGGGuuaCUGCGaCGAag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.