miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 3' -54.8 NC_005357.1 + 289 0.69 0.428384
Target:  5'- aGUAGCuGCGCCgGAaGGCGCgcuCUUCc -3'
miRNA:   3'- aCAUCG-CGCGGgUUaCUGCGac-GAAG- -5'
26542 3' -54.8 NC_005357.1 + 1655 0.66 0.601341
Target:  5'- gGUcuGCGCGUCCuguuugcgcGUGAUGCUGCcgCg -3'
miRNA:   3'- aCAu-CGCGCGGGu--------UACUGCGACGaaG- -5'
26542 3' -54.8 NC_005357.1 + 2100 1.11 0.000482
Target:  5'- aUGUAGCGCGCCCAAUGACGCUGCUUCa -3'
miRNA:   3'- -ACAUCGCGCGGGUUACUGCGACGAAG- -5'
26542 3' -54.8 NC_005357.1 + 2738 0.68 0.479689
Target:  5'- --gAGCGCgGCCC---GGCGCUGCUc- -3'
miRNA:   3'- acaUCGCG-CGGGuuaCUGCGACGAag -5'
26542 3' -54.8 NC_005357.1 + 4682 0.68 0.507529
Target:  5'- --cAGCGCGCCgGAuagcgcggcgagaaUGGCcggcaaguuguugGCUGCUUCg -3'
miRNA:   3'- acaUCGCGCGGgUU--------------ACUG-------------CGACGAAG- -5'
26542 3' -54.8 NC_005357.1 + 4789 0.67 0.544917
Target:  5'- ----cUGCGCCCAGcacgccggcUGGCGCUGCg-- -3'
miRNA:   3'- acaucGCGCGGGUU---------ACUGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 6621 0.66 0.64704
Target:  5'- --cAGCGgGCgC-GUGGCGCUGCg-- -3'
miRNA:   3'- acaUCGCgCGgGuUACUGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 7252 0.66 0.612749
Target:  5'- aUGUcGGC-CGCCCAGgucuUGAacUGCUGCUUg -3'
miRNA:   3'- -ACA-UCGcGCGGGUU----ACU--GCGACGAAg -5'
26542 3' -54.8 NC_005357.1 + 8005 0.68 0.490311
Target:  5'- cGUcGGaCGUGCCCu-UGGCGCcaGCUUCg -3'
miRNA:   3'- aCA-UC-GCGCGGGuuACUGCGa-CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 8065 0.71 0.336262
Target:  5'- ---cGCGCGCCCAGgu-CGCUGCc-- -3'
miRNA:   3'- acauCGCGCGGGUUacuGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 8176 0.67 0.533818
Target:  5'- ---cGUGCGCCCg--GAUGCUGCc-- -3'
miRNA:   3'- acauCGCGCGGGuuaCUGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 12745 0.67 0.544917
Target:  5'- gGUGcCGCGCCCAGacgcuUGGCGC-GCUc- -3'
miRNA:   3'- aCAUcGCGCGGGUU-----ACUGCGaCGAag -5'
26542 3' -54.8 NC_005357.1 + 12923 0.66 0.63561
Target:  5'- --cGGcCGCGCCCAua-ACGCUagucaGCUUCu -3'
miRNA:   3'- acaUC-GCGCGGGUuacUGCGA-----CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 13018 0.66 0.601341
Target:  5'- cGUGGgcaaCGCGCCCAA-GAUuCUGCUg- -3'
miRNA:   3'- aCAUC----GCGCGGGUUaCUGcGACGAag -5'
26542 3' -54.8 NC_005357.1 + 13298 0.66 0.63561
Target:  5'- uUGcAGCGCGCCgGGgccGGCGUUGUa-- -3'
miRNA:   3'- -ACaUCGCGCGGgUUa--CUGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 13753 0.66 0.601341
Target:  5'- cGUGGCGCGCCgCGcUGGCGagGCc-- -3'
miRNA:   3'- aCAUCGCGCGG-GUuACUGCgaCGaag -5'
26542 3' -54.8 NC_005357.1 + 15697 0.68 0.501041
Target:  5'- --gGGCGCGCUgGcgGugGCccgGCUUUg -3'
miRNA:   3'- acaUCGCGCGGgUuaCugCGa--CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 16382 0.71 0.336262
Target:  5'- aUGgAGCGCGCCCGcc-GCGCggGCUUUg -3'
miRNA:   3'- -ACaUCGCGCGGGUuacUGCGa-CGAAG- -5'
26542 3' -54.8 NC_005357.1 + 16685 0.7 0.408787
Target:  5'- --cAGCGCGCCCAGcG-UGCUGCc-- -3'
miRNA:   3'- acaUCGCGCGGGUUaCuGCGACGaag -5'
26542 3' -54.8 NC_005357.1 + 18667 0.7 0.371319
Target:  5'- --cGGCGCaucgGCCCGguggcgccggcAUGGCGCUGCUg- -3'
miRNA:   3'- acaUCGCG----CGGGU-----------UACUGCGACGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.