Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26542 | 3' | -54.8 | NC_005357.1 | + | 2100 | 1.11 | 0.000482 |
Target: 5'- aUGUAGCGCGCCCAAUGACGCUGCUUCa -3' miRNA: 3'- -ACAUCGCGCGGGUUACUGCGACGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 25135 | 0.76 | 0.171747 |
Target: 5'- aUGgauGCGCGCCCGcgG-CGCcgGCUUCg -3' miRNA: 3'- -ACau-CGCGCGGGUuaCuGCGa-CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 28017 | 0.75 | 0.197578 |
Target: 5'- --aGGCGCGCCUGGcGACGCccaGCUUCg -3' miRNA: 3'- acaUCGCGCGGGUUaCUGCGa--CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 8065 | 0.71 | 0.336262 |
Target: 5'- ---cGCGCGCCCAGgu-CGCUGCc-- -3' miRNA: 3'- acauCGCGCGGGUUacuGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 16382 | 0.71 | 0.336262 |
Target: 5'- aUGgAGCGCGCCCGcc-GCGCggGCUUUg -3' miRNA: 3'- -ACaUCGCGCGGGUuacUGCGa-CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 18667 | 0.7 | 0.371319 |
Target: 5'- --cGGCGCaucgGCCCGguggcgccggcAUGGCGCUGCUg- -3' miRNA: 3'- acaUCGCG----CGGGU-----------UACUGCGACGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 16685 | 0.7 | 0.408787 |
Target: 5'- --cAGCGCGCCCAGcG-UGCUGCc-- -3' miRNA: 3'- acaUCGCGCGGGUUaCuGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 289 | 0.69 | 0.428384 |
Target: 5'- aGUAGCuGCGCCgGAaGGCGCgcuCUUCc -3' miRNA: 3'- aCAUCG-CGCGGgUUaCUGCGac-GAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 2738 | 0.68 | 0.479689 |
Target: 5'- --gAGCGCgGCCC---GGCGCUGCUc- -3' miRNA: 3'- acaUCGCG-CGGGuuaCUGCGACGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 8005 | 0.68 | 0.490311 |
Target: 5'- cGUcGGaCGUGCCCu-UGGCGCcaGCUUCg -3' miRNA: 3'- aCA-UC-GCGCGGGuuACUGCGa-CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 42139 | 0.68 | 0.501041 |
Target: 5'- --gAGCGCGCCUuccGGCGCaGCUa- -3' miRNA: 3'- acaUCGCGCGGGuuaCUGCGaCGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 15697 | 0.68 | 0.501041 |
Target: 5'- --gGGCGCGCUgGcgGugGCccgGCUUUg -3' miRNA: 3'- acaUCGCGCGGgUuaCugCGa--CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 4682 | 0.68 | 0.507529 |
Target: 5'- --cAGCGCGCCgGAuagcgcggcgagaaUGGCcggcaaguuguugGCUGCUUCg -3' miRNA: 3'- acaUCGCGCGGgUU--------------ACUG-------------CGACGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 32688 | 0.68 | 0.511874 |
Target: 5'- --aAGCGCGCCCAccacGAgcaguucgccCGCgGCUUCg -3' miRNA: 3'- acaUCGCGCGGGUua--CU----------GCGaCGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 25092 | 0.68 | 0.521705 |
Target: 5'- --cAGCGCGCCCGGcGcCGUgggauacagcgggUGCUUCu -3' miRNA: 3'- acaUCGCGCGGGUUaCuGCG-------------ACGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 27293 | 0.68 | 0.522802 |
Target: 5'- ---cGCGCGCCU--UGGCGaagGCUUCc -3' miRNA: 3'- acauCGCGCGGGuuACUGCga-CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 34863 | 0.67 | 0.533818 |
Target: 5'- cGUGGaCGUGUCCAagccgGUGGCGCcGCggaUCg -3' miRNA: 3'- aCAUC-GCGCGGGU-----UACUGCGaCGa--AG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 8176 | 0.67 | 0.533818 |
Target: 5'- ---cGUGCGCCCg--GAUGCUGCc-- -3' miRNA: 3'- acauCGCGCGGGuuaCUGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 12745 | 0.67 | 0.544917 |
Target: 5'- gGUGcCGCGCCCAGacgcuUGGCGC-GCUc- -3' miRNA: 3'- aCAUcGCGCGGGUU-----ACUGCGaCGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 4789 | 0.67 | 0.544917 |
Target: 5'- ----cUGCGCCCAGcacgccggcUGGCGCUGCg-- -3' miRNA: 3'- acaucGCGCGGGUU---------ACUGCGACGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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