Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26542 | 3' | -54.8 | NC_005357.1 | + | 13018 | 0.66 | 0.601341 |
Target: 5'- cGUGGgcaaCGCGCCCAA-GAUuCUGCUg- -3' miRNA: 3'- aCAUC----GCGCGGGUUaCUGcGACGAag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 1655 | 0.66 | 0.601341 |
Target: 5'- gGUcuGCGCGUCCuguuugcgcGUGAUGCUGCcgCg -3' miRNA: 3'- aCAu-CGCGCGGGu--------UACUGCGACGaaG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 13753 | 0.66 | 0.601341 |
Target: 5'- cGUGGCGCGCCgCGcUGGCGagGCc-- -3' miRNA: 3'- aCAUCGCGCGG-GUuACUGCgaCGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 7252 | 0.66 | 0.612749 |
Target: 5'- aUGUcGGC-CGCCCAGgucuUGAacUGCUGCUUg -3' miRNA: 3'- -ACA-UCGcGCGGGUU----ACU--GCGACGAAg -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 13298 | 0.66 | 0.63561 |
Target: 5'- uUGcAGCGCGCCgGGgccGGCGUUGUa-- -3' miRNA: 3'- -ACaUCGCGCGGgUUa--CUGCGACGaag -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 12923 | 0.66 | 0.63561 |
Target: 5'- --cGGcCGCGCCCAua-ACGCUagucaGCUUCu -3' miRNA: 3'- acaUC-GCGCGGGUuacUGCGA-----CGAAG- -5' |
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26542 | 3' | -54.8 | NC_005357.1 | + | 6621 | 0.66 | 0.64704 |
Target: 5'- --cAGCGgGCgC-GUGGCGCUGCg-- -3' miRNA: 3'- acaUCGCgCGgGuUACUGCGACGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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