miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 28947 0.66 0.377693
Target:  5'- -cGCGGuCGGCaucgcccaGGUCAugcccgacACCGCGCC-Cg -3'
miRNA:   3'- caCGUC-GUCGg-------CCAGU--------UGGCGCGGcG- -5'
26542 5' -60.5 NC_005357.1 + 33207 0.66 0.377693
Target:  5'- -cGCcgGGCGcGCCGcagaacGUgcGCCGCGCCGCc -3'
miRNA:   3'- caCG--UCGU-CGGC------CAguUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 15393 0.66 0.377693
Target:  5'- cGUGCgggccGGCGaagauGCCGGaCGACCGaUGCaCGCg -3'
miRNA:   3'- -CACG-----UCGU-----CGGCCaGUUGGC-GCG-GCG- -5'
26542 5' -60.5 NC_005357.1 + 20190 0.66 0.377693
Target:  5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3'
miRNA:   3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8592 0.66 0.376819
Target:  5'- cGUGCGGCcuggugcuggauaAGCUGGuugcgcuucUCGGCCGCuGCgGUg -3'
miRNA:   3'- -CACGUCG-------------UCGGCC---------AGUUGGCG-CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 18710 0.66 0.376819
Target:  5'- -aGCAGCAGCgcauCGGUaCGGCgGCacgggauGCCGUc -3'
miRNA:   3'- caCGUCGUCG----GCCA-GUUGgCG-------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 34591 0.66 0.376819
Target:  5'- -cGCGuGC-GCCuGGUCAucgugcaGCCGCGCCu- -3'
miRNA:   3'- caCGU-CGuCGG-CCAGU-------UGGCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 785 0.66 0.375945
Target:  5'- -cGCAGCGuauuucagguuuCCGG-CGA-CGCGCCGCg -3'
miRNA:   3'- caCGUCGUc-----------GGCCaGUUgGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9273 0.66 0.369012
Target:  5'- -aGCGGuCGGcCCGGUacACCG-GCUGCg -3'
miRNA:   3'- caCGUC-GUC-GGCCAguUGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25799 0.66 0.369012
Target:  5'- -cGCGGCGcGCuCGGuaUCGuugaucugcACCGgGCCGCc -3'
miRNA:   3'- caCGUCGU-CG-GCC--AGU---------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 32523 0.66 0.367292
Target:  5'- cGUGCAGgCuggugauGCCGGcCAggaugcuGCCGCcggcgauGCCGCu -3'
miRNA:   3'- -CACGUC-Gu------CGGCCaGU-------UGGCG-------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 32566 0.66 0.360468
Target:  5'- -aGCAGCGcGCCGGUgcCAcgcucAUCGaCGCCGa -3'
miRNA:   3'- caCGUCGU-CGGCCA--GU-----UGGC-GCGGCg -5'
26542 5' -60.5 NC_005357.1 + 1947 0.66 0.360468
Target:  5'- cUGCGGguuCUGGUCGAgCGCGCgGCc -3'
miRNA:   3'- cACGUCgucGGCCAGUUgGCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 37723 0.66 0.360468
Target:  5'- -aGCAGCcaacaacuuGCCGGcCAuucucGCCGCGCUauccgGCg -3'
miRNA:   3'- caCGUCGu--------CGGCCaGU-----UGGCGCGG-----CG- -5'
26542 5' -60.5 NC_005357.1 + 1142 0.66 0.360468
Target:  5'- -aGCAGCGGCCGuuugcgcucgccGUCGAUgGUgaaggacaGCCGUa -3'
miRNA:   3'- caCGUCGUCGGC------------CAGUUGgCG--------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 5541 0.66 0.360468
Target:  5'- -gGCAGCuuCUGGUCAAUcaCGCGCaugGCu -3'
miRNA:   3'- caCGUCGucGGCCAGUUG--GCGCGg--CG- -5'
26542 5' -60.5 NC_005357.1 + 23643 0.66 0.360468
Target:  5'- -cGCGGUAGCCGG-CGGCgG-GCaGCa -3'
miRNA:   3'- caCGUCGUCGGCCaGUUGgCgCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 30580 0.66 0.360468
Target:  5'- -cGCGGgGuucGCCcaGGcCAACCGCGgCGCg -3'
miRNA:   3'- caCGUCgU---CGG--CCaGUUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 9993 0.66 0.360468
Target:  5'- -cGUGGCGG--GGUCGAaaGUGCCGCg -3'
miRNA:   3'- caCGUCGUCggCCAGUUggCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25828 0.66 0.359622
Target:  5'- -gGCGGC-GCCaacaccaucgcguGGUCGGCCucguccggcGCGUCGCg -3'
miRNA:   3'- caCGUCGuCGG-------------CCAGUUGG---------CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.