miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 24301 0.66 0.352064
Target:  5'- -gGgGGCGGUgaGGUCGGCgaGCaGCCGCg -3'
miRNA:   3'- caCgUCGUCGg-CCAGUUGg-CG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8147 0.66 0.352064
Target:  5'- cGUGCGGguGUCGG-CG-CUGCGUcccugCGCg -3'
miRNA:   3'- -CACGUCguCGGCCaGUuGGCGCG-----GCG- -5'
26542 5' -60.5 NC_005357.1 + 28656 0.66 0.343799
Target:  5'- aGUGCcagaucGguGCCGG-CGGCCuCGCCaGCg -3'
miRNA:   3'- -CACGu-----CguCGGCCaGUUGGcGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 27701 0.66 0.335675
Target:  5'- -gGCcGCGcGCCGG-CAGCgGCucGCCGCc -3'
miRNA:   3'- caCGuCGU-CGGCCaGUUGgCG--CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 26263 0.66 0.335675
Target:  5'- -gGCAcccGcCGGCCuGGUCGGCuCGCGCauCGCg -3'
miRNA:   3'- caCGU---C-GUCGG-CCAGUUG-GCGCG--GCG- -5'
26542 5' -60.5 NC_005357.1 + 2430 0.66 0.343799
Target:  5'- -gGCAGCAgGCCGGccUCGAagauCgGCGCCa- -3'
miRNA:   3'- caCGUCGU-CGGCC--AGUU----GgCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 689 0.66 0.335675
Target:  5'- -gGCGGC-GCCGG----CCGgGCCGCc -3'
miRNA:   3'- caCGUCGuCGGCCaguuGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21189 0.66 0.335675
Target:  5'- -cGCGGCcugcuGCUGGUCug-CGCGuuGCu -3'
miRNA:   3'- caCGUCGu----CGGCCAGuugGCGCggCG- -5'
26542 5' -60.5 NC_005357.1 + 9273 0.66 0.369012
Target:  5'- -aGCGGuCGGcCCGGUacACCG-GCUGCg -3'
miRNA:   3'- caCGUC-GUC-GGCCAguUGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 13634 0.66 0.352064
Target:  5'- -aGCGGCAGCaaGUCcGgCGCgGCCGUc -3'
miRNA:   3'- caCGUCGUCGgcCAGuUgGCG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 29334 0.66 0.343799
Target:  5'- -gGCGGUcGCCGGccaaguccUCGAaccaCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGGCC--------AGUUg---GCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 25799 0.66 0.369012
Target:  5'- -cGCGGCGcGCuCGGuaUCGuugaucugcACCGgGCCGCc -3'
miRNA:   3'- caCGUCGU-CG-GCC--AGU---------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 18710 0.66 0.376819
Target:  5'- -aGCAGCAGCgcauCGGUaCGGCgGCacgggauGCCGUc -3'
miRNA:   3'- caCGUCGUCG----GCCA-GUUGgCG-------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 23643 0.66 0.360468
Target:  5'- -cGCGGUAGCCGG-CGGCgG-GCaGCa -3'
miRNA:   3'- caCGUCGUCGGCCaGUUGgCgCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 785 0.66 0.375945
Target:  5'- -cGCAGCGuauuucagguuuCCGG-CGA-CGCGCCGCg -3'
miRNA:   3'- caCGUCGUc-----------GGCCaGUUgGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9993 0.66 0.360468
Target:  5'- -cGUGGCGG--GGUCGAaaGUGCCGCg -3'
miRNA:   3'- caCGUCGUCggCCAGUUggCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8592 0.66 0.376819
Target:  5'- cGUGCGGCcuggugcuggauaAGCUGGuugcgcuucUCGGCCGCuGCgGUg -3'
miRNA:   3'- -CACGUCG-------------UCGGCC---------AGUUGGCG-CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 40398 0.66 0.335675
Target:  5'- -cGCcgaGGCGGCCGGUauGCCgGUGCUGg -3'
miRNA:   3'- caCG---UCGUCGGCCAguUGG-CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 20190 0.66 0.377693
Target:  5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3'
miRNA:   3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 11174 0.66 0.343799
Target:  5'- uUGCGuGC-GCUGGUCGGCCGUGgUGa -3'
miRNA:   3'- cACGU-CGuCGGCCAGUUGGCGCgGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.