miRNA display CGI


Results 1 - 20 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 477 0.68 0.254959
Target:  5'- cUGUcGCGGUCGGaugccUCGgcagcauACUGCGCCGCg -3'
miRNA:   3'- cACGuCGUCGGCC-----AGU-------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 602 0.68 0.262192
Target:  5'- -gGCcGCcuGCgGGUCGGCCagcaGCGCCGUg -3'
miRNA:   3'- caCGuCGu-CGgCCAGUUGG----CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 689 0.66 0.335675
Target:  5'- -gGCGGC-GCCGG----CCGgGCCGCc -3'
miRNA:   3'- caCGUCGuCGGCCaguuGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 760 0.69 0.216655
Target:  5'- -cGUAGUuguucaccgucuuGCCGGUCAgAUCGgGCCGCu -3'
miRNA:   3'- caCGUCGu------------CGGCCAGU-UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 785 0.66 0.375945
Target:  5'- -cGCAGCGuauuucagguuuCCGG-CGA-CGCGCCGCg -3'
miRNA:   3'- caCGUCGUc-----------GGCCaGUUgGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 1046 0.67 0.312151
Target:  5'- -gGCGGCAGCauGUCG-CCGCGaaCCGg -3'
miRNA:   3'- caCGUCGUCGgcCAGUuGGCGC--GGCg -5'
26542 5' -60.5 NC_005357.1 + 1142 0.66 0.360468
Target:  5'- -aGCAGCGGCCGuuugcgcucgccGUCGAUgGUgaaggacaGCCGUa -3'
miRNA:   3'- caCGUCGUCGGC------------CAGUUGgCG--------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 1947 0.66 0.360468
Target:  5'- cUGCGGguuCUGGUCGAgCGCGCgGCc -3'
miRNA:   3'- cACGUCgucGGCCAGUUgGCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 2134 1.1 0.000168
Target:  5'- cGUGCAGCAGCCGGUCAACCGCGCCGCc -3'
miRNA:   3'- -CACGUCGUCGGCCAGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2235 0.68 0.249164
Target:  5'- -cGCAGCAGgCGGcgCGugGCCGCGCa-- -3'
miRNA:   3'- caCGUCGUCgGCCa-GU--UGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 2430 0.66 0.343799
Target:  5'- -gGCAGCAgGCCGGccUCGAagauCgGCGCCa- -3'
miRNA:   3'- caCGUCGU-CGGCC--AGUU----GgCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 2828 0.67 0.289899
Target:  5'- gGUGCucGCGGCCacgcgCAGCgGCGCCaGCa -3'
miRNA:   3'- -CACGu-CGUCGGcca--GUUGgCGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 3549 0.74 0.093878
Target:  5'- -cGC-GCAGuCCcGcCAACCGCGCCGCa -3'
miRNA:   3'- caCGuCGUC-GGcCaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 3564 0.69 0.235457
Target:  5'- -cGCAGCAGCgGGcugggcguacacCGAuCCGCGgCCGCc -3'
miRNA:   3'- caCGUCGUCGgCCa-----------GUU-GGCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 3805 0.67 0.319851
Target:  5'- -gGCAGCaugaccAGgCGGUCGGggGCGCCGUu -3'
miRNA:   3'- caCGUCG------UCgGCCAGUUggCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4368 0.67 0.304592
Target:  5'- -gGaCGGCAGgCGGaugcgCAGCCagGCGCCGUc -3'
miRNA:   3'- caC-GUCGUCgGCCa----GUUGG--CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4416 0.76 0.070671
Target:  5'- cGUGCGGCAGUCguaGGUCGuacCCG-GCCGCa -3'
miRNA:   3'- -CACGUCGUCGG---CCAGUu--GGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4529 0.69 0.213276
Target:  5'- -cGUGGCGuGCUGGgCggUCGUGCCGCc -3'
miRNA:   3'- caCGUCGU-CGGCCaGuuGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4950 0.67 0.327692
Target:  5'- -cGCcacgauGCAGCCGcGU--AUCGCGCUGCu -3'
miRNA:   3'- caCGu-----CGUCGGC-CAguUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 5117 0.68 0.282763
Target:  5'- gGUGCGGCuggcGCCGuUgAACUGCaacguGCCGCg -3'
miRNA:   3'- -CACGUCGu---CGGCcAgUUGGCG-----CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.