miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 5441 0.67 0.312151
Target:  5'- -gGCGGCgugggcgaGGUCGGuaUCGACCaucaCGCCGCg -3'
miRNA:   3'- caCGUCG--------UCGGCC--AGUUGGc---GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 5541 0.66 0.360468
Target:  5'- -gGCAGCuuCUGGUCAAUcaCGCGCaugGCu -3'
miRNA:   3'- caCGUCGucGGCCAGUUG--GCGCGg--CG- -5'
26542 5' -60.5 NC_005357.1 + 5802 0.66 0.334871
Target:  5'- -cGCGGCAGCgccagcggauaguCGGgcauGgCGUGCCGCa -3'
miRNA:   3'- caCGUCGUCG-------------GCCagu-UgGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 7187 0.67 0.322971
Target:  5'- -cGCccugacGCAGCCGGgacagcgCGAuguccacggcagcauCUGCGCCGCg -3'
miRNA:   3'- caCGu-----CGUCGGCCa------GUU---------------GGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 7333 0.75 0.087972
Target:  5'- -cGCAGCAGCCGGUUGGCgucgaucaaccacuCGUGCCa- -3'
miRNA:   3'- caCGUCGUCGGCCAGUUG--------------GCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 7764 0.72 0.146495
Target:  5'- uUGCAGCA-CCGGcgCGAuCUGCGCCGg -3'
miRNA:   3'- cACGUCGUcGGCCa-GUU-GGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 8147 0.66 0.352064
Target:  5'- cGUGCGGguGUCGG-CG-CUGCGUcccugCGCg -3'
miRNA:   3'- -CACGUCguCGGCCaGUuGGCGCG-----GCG- -5'
26542 5' -60.5 NC_005357.1 + 8400 0.7 0.19189
Target:  5'- cUGC-GUAGCCaGUCGGCCaGgGCCGUg -3'
miRNA:   3'- cACGuCGUCGGcCAGUUGG-CgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8592 0.66 0.376819
Target:  5'- cGUGCGGCcuggugcuggauaAGCUGGuugcgcuucUCGGCCGCuGCgGUg -3'
miRNA:   3'- -CACGUCG-------------UCGGCC---------AGUUGGCG-CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 8620 0.67 0.319851
Target:  5'- -gGC-GUGGCCGGuacgcccuUCGgaaacgccccagGCCGCGCCGUa -3'
miRNA:   3'- caCGuCGUCGGCC--------AGU------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8663 0.67 0.319851
Target:  5'- -cGC-GCGGUCGG-CAuugCGUGCCGCg -3'
miRNA:   3'- caCGuCGUCGGCCaGUug-GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8672 0.75 0.091265
Target:  5'- uGUGCAGCGGCU-----GCUGCGCCGCc -3'
miRNA:   3'- -CACGUCGUCGGccaguUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8785 0.76 0.074822
Target:  5'- -cGCGGC-GCacgaugGGUCGGCCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGg-----CCAGUUGGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 8931 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGgauucgccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9002 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9050 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9098 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9146 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9194 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9273 0.66 0.369012
Target:  5'- -aGCGGuCGGcCCGGUacACCG-GCUGCg -3'
miRNA:   3'- caCGUC-GUC-GGCCAguUGGCgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.