miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 9098 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9194 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 39676 0.73 0.120782
Target:  5'- -gGCAGUGGUCGG-CAcgcccgagcagcGCCGgGCCGCg -3'
miRNA:   3'- caCGUCGUCGGCCaGU------------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 19029 0.73 0.12418
Target:  5'- gGUGCGGUAGCCcuGGUagCGGCCGCcgGCgGCg -3'
miRNA:   3'- -CACGUCGUCGG--CCA--GUUGGCG--CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 25593 0.72 0.131244
Target:  5'- cGUGCAuccgaacuauGC-GCCGcGUgAACUGCGCCGCc -3'
miRNA:   3'- -CACGU----------CGuCGGC-CAgUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28554 0.72 0.134913
Target:  5'- uUGCGGCcGCCGGcC-AUCGCGgCGCg -3'
miRNA:   3'- cACGUCGuCGGCCaGuUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 13856 0.72 0.134913
Target:  5'- cUGcCGGUGGCCGa-CGugCGCGCCGCg -3'
miRNA:   3'- cAC-GUCGUCGGCcaGUugGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27832 0.72 0.142537
Target:  5'- cUGCccGCGGUgGcGcCGGCCGCGCCGCu -3'
miRNA:   3'- cACGu-CGUCGgC-CaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 7764 0.72 0.146495
Target:  5'- uUGCAGCA-CCGGcgCGAuCUGCGCCGg -3'
miRNA:   3'- cACGUCGUcGGCCa-GUU-GGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 28149 0.72 0.146495
Target:  5'- -aGCAGCuuGCCGGuggucagaUCGACCaCGCCGUu -3'
miRNA:   3'- caCGUCGu-CGGCC--------AGUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21822 0.72 0.152204
Target:  5'- uUGCAGCGGCgGGUUgcucuuguagucgauGGCCuGCGCCuuGCg -3'
miRNA:   3'- cACGUCGUCGgCCAG---------------UUGG-CGCGG--CG- -5'
26542 5' -60.5 NC_005357.1 + 21250 0.71 0.154712
Target:  5'- -aGCAGCAgGCCGcG-CAgcagGCCGCGCUGUu -3'
miRNA:   3'- caCGUCGU-CGGC-CaGU----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 29107 0.71 0.158976
Target:  5'- cGUGCGggacuuGCuGCCGGUCAcGCgCGCgagGCCGCa -3'
miRNA:   3'- -CACGU------CGuCGGCCAGU-UG-GCG---CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 14359 0.71 0.158976
Target:  5'- -cGCGGUguccuggaaGGCgGGggCAuCCGCGCCGCg -3'
miRNA:   3'- caCGUCG---------UCGgCCa-GUuGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28198 0.71 0.162903
Target:  5'- gGUGCGGC-GCCuuguccaGGUCGGCCaCGCCGa -3'
miRNA:   3'- -CACGUCGuCGG-------CCAGUUGGcGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 31291 0.71 0.163345
Target:  5'- -gGCAGCgaAGCCuGG-CGACCGCGUgGUg -3'
miRNA:   3'- caCGUCG--UCGG-CCaGUUGGCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 41993 0.71 0.163345
Target:  5'- -cGCAGCAGCCcaacgacaaGGUaCGGCCGacgaucacCGCCGUg -3'
miRNA:   3'- caCGUCGUCGG---------CCA-GUUGGC--------GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 15538 0.71 0.166467
Target:  5'- aUGCAcGguGCCGGccuccacguccaggUCAAUgGCGCCGUc -3'
miRNA:   3'- cACGU-CguCGGCC--------------AGUUGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 30399 0.71 0.167369
Target:  5'- -cGCugGGCAagaccucGCCGGcCAcgGCCGCGCUGCu -3'
miRNA:   3'- caCG--UCGU-------CGGCCaGU--UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 38000 0.71 0.167822
Target:  5'- gGUGUuGCGGCCGGguaCGACCuacgacUGCCGCa -3'
miRNA:   3'- -CACGuCGUCGGCCa--GUUGGc-----GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.