Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26542 | 5' | -60.5 | NC_005357.1 | + | 28947 | 0.66 | 0.377693 |
Target: 5'- -cGCGGuCGGCaucgcccaGGUCAugcccgacACCGCGCC-Cg -3' miRNA: 3'- caCGUC-GUCGg-------CCAGU--------UGGCGCGGcG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 33207 | 0.66 | 0.377693 |
Target: 5'- -cGCcgGGCGcGCCGcagaacGUgcGCCGCGCCGCc -3' miRNA: 3'- caCG--UCGU-CGGC------CAguUGGCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 27701 | 0.66 | 0.335675 |
Target: 5'- -gGCcGCGcGCCGG-CAGCgGCucGCCGCc -3' miRNA: 3'- caCGuCGU-CGGCCaGUUGgCG--CGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 37723 | 0.66 | 0.360468 |
Target: 5'- -aGCAGCcaacaacuuGCCGGcCAuucucGCCGCGCUauccgGCg -3' miRNA: 3'- caCGUCGu--------CGGCCaGU-----UGGCGCGG-----CG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 1142 | 0.66 | 0.360468 |
Target: 5'- -aGCAGCGGCCGuuugcgcucgccGUCGAUgGUgaaggacaGCCGUa -3' miRNA: 3'- caCGUCGUCGGC------------CAGUUGgCG--------CGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 1947 | 0.66 | 0.360468 |
Target: 5'- cUGCGGguuCUGGUCGAgCGCGCgGCc -3' miRNA: 3'- cACGUCgucGGCCAGUUgGCGCGgCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 20190 | 0.66 | 0.377693 |
Target: 5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3' miRNA: 3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 32421 | 0.66 | 0.343799 |
Target: 5'- -gGCGGgGGCCGGg----CGCGCgGCa -3' miRNA: 3'- caCGUCgUCGGCCaguugGCGCGgCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 39254 | 0.66 | 0.352064 |
Target: 5'- -cGCAGCGgacGCCGGgcuuGCCaUGCUGCg -3' miRNA: 3'- caCGUCGU---CGGCCagu-UGGcGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 28656 | 0.66 | 0.343799 |
Target: 5'- aGUGCcagaucGguGCCGG-CGGCCuCGCCaGCg -3' miRNA: 3'- -CACGu-----CguCGGCCaGUUGGcGCGG-CG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 40398 | 0.66 | 0.335675 |
Target: 5'- -cGCcgaGGCGGCCGGUauGCCgGUGCUGg -3' miRNA: 3'- caCG---UCGUCGGCCAguUGG-CGCGGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 689 | 0.66 | 0.335675 |
Target: 5'- -gGCGGC-GCCGG----CCGgGCCGCc -3' miRNA: 3'- caCGUCGuCGGCCaguuGGCgCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 21189 | 0.66 | 0.335675 |
Target: 5'- -cGCGGCcugcuGCUGGUCug-CGCGuuGCu -3' miRNA: 3'- caCGUCGu----CGGCCAGuugGCGCggCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 11174 | 0.66 | 0.343799 |
Target: 5'- uUGCGuGC-GCUGGUCGGCCGUGgUGa -3' miRNA: 3'- cACGU-CGuCGGCCAGUUGGCGCgGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 26263 | 0.66 | 0.335675 |
Target: 5'- -gGCAcccGcCGGCCuGGUCGGCuCGCGCauCGCg -3' miRNA: 3'- caCGU---C-GUCGG-CCAGUUG-GCGCG--GCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 2430 | 0.66 | 0.343799 |
Target: 5'- -gGCAGCAgGCCGGccUCGAagauCgGCGCCa- -3' miRNA: 3'- caCGUCGU-CGGCC--AGUU----GgCGCGGcg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 33624 | 0.67 | 0.319851 |
Target: 5'- -aGCAGaucgguacugacCGGCgCGGcCGACCcaucguGCGCCGCg -3' miRNA: 3'- caCGUC------------GUCG-GCCaGUUGG------CGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 1046 | 0.67 | 0.312151 |
Target: 5'- -gGCGGCAGCauGUCG-CCGCGaaCCGg -3' miRNA: 3'- caCGUCGUCGgcCAGUuGGCGC--GGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 7187 | 0.67 | 0.322971 |
Target: 5'- -cGCccugacGCAGCCGGgacagcgCGAuguccacggcagcauCUGCGCCGCg -3' miRNA: 3'- caCGu-----CGUCGGCCa------GUU---------------GGCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 31612 | 0.67 | 0.319851 |
Target: 5'- ------gAGCCGGaaggauUCAGCCGCGCCGa -3' miRNA: 3'- cacgucgUCGGCC------AGUUGGCGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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