miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 41993 0.71 0.163345
Target:  5'- -cGCAGCAGCCcaacgacaaGGUaCGGCCGacgaucacCGCCGUg -3'
miRNA:   3'- caCGUCGUCGG---------CCA-GUUGGC--------GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 41732 0.66 0.352064
Target:  5'- -gGCGGUaucuuGGgCGGccCGGCCgGCGCCGCc -3'
miRNA:   3'- caCGUCG-----UCgGCCa-GUUGG-CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 40965 0.69 0.230632
Target:  5'- cUGcCAGgaGGCCGc-CGACCGCGCCGUc -3'
miRNA:   3'- cAC-GUCg-UCGGCcaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 40398 0.66 0.335675
Target:  5'- -cGCcgaGGCGGCCGGUauGCCgGUGCUGg -3'
miRNA:   3'- caCG---UCGUCGGCCAguUGG-CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 40284 0.74 0.093878
Target:  5'- cGUGUacGGCGGCgCGGUUGACCG-GCUGCu -3'
miRNA:   3'- -CACG--UCGUCG-GCCAGUUGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 39676 0.73 0.120782
Target:  5'- -gGCAGUGGUCGG-CAcgcccgagcagcGCCGgGCCGCg -3'
miRNA:   3'- caCGUCGUCGGCCaGU------------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 39254 0.66 0.352064
Target:  5'- -cGCAGCGgacGCCGGgcuuGCCaUGCUGCg -3'
miRNA:   3'- caCGUCGU---CGGCCagu-UGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 38000 0.71 0.167822
Target:  5'- gGUGUuGCGGCCGGguaCGACCuacgacUGCCGCa -3'
miRNA:   3'- -CACGuCGUCGGCCa--GUUGGc-----GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 37723 0.66 0.360468
Target:  5'- -aGCAGCcaacaacuuGCCGGcCAuucucGCCGCGCUauccgGCg -3'
miRNA:   3'- caCGUCGu--------CGGCCaGU-----UGGCGCGG-----CG- -5'
26542 5' -60.5 NC_005357.1 + 34645 0.68 0.249164
Target:  5'- -gGCGGCGaaggguggacGCCGGcgcaGAUCGCGCCGg -3'
miRNA:   3'- caCGUCGU----------CGGCCag--UUGGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 34591 0.66 0.376819
Target:  5'- -cGCGuGC-GCCuGGUCAucgugcaGCCGCGCCu- -3'
miRNA:   3'- caCGU-CGuCGG-CCAGU-------UGGCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 34522 0.69 0.212717
Target:  5'- -cGCaacgAGCAGCUGG-CGAUcuacgcaCGCGCCGCc -3'
miRNA:   3'- caCG----UCGUCGGCCaGUUG-------GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33814 0.7 0.20611
Target:  5'- -cGCAGCGGCCGaGaagcgCAACCaGCuuauccagcaccagGCCGCa -3'
miRNA:   3'- caCGUCGUCGGC-Ca----GUUGG-CG--------------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33764 0.68 0.262192
Target:  5'- -cGCAGCAGCCGcugCAcacagcgaguACgGCGCgGCc -3'
miRNA:   3'- caCGUCGUCGGCca-GU----------UGgCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 33654 0.67 0.312151
Target:  5'- cGUGgAGguGUCGGaauGACCGCG-CGCa -3'
miRNA:   3'- -CACgUCguCGGCCag-UUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 33624 0.67 0.319851
Target:  5'- -aGCAGaucgguacugacCGGCgCGGcCGACCcaucguGCGCCGCg -3'
miRNA:   3'- caCGUC------------GUCG-GCCaGUUGG------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33207 0.66 0.377693
Target:  5'- -cGCcgGGCGcGCCGcagaacGUgcGCCGCGCCGCc -3'
miRNA:   3'- caCG--UCGU-CGGC------CAguUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33150 0.78 0.047246
Target:  5'- aUGC-GCAGCCGGUguACCGgGCCGa -3'
miRNA:   3'- cACGuCGUCGGCCAguUGGCgCGGCg -5'
26542 5' -60.5 NC_005357.1 + 33047 0.67 0.327692
Target:  5'- aUGCAGUGGCUGcaCAauGCaCGCGgCCGCa -3'
miRNA:   3'- cACGUCGUCGGCcaGU--UG-GCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 32806 0.7 0.185356
Target:  5'- gGUGCuGCGcgucuGCCGGUCGgacuacaccaGCCGCaacggcuucgccugGCCGCa -3'
miRNA:   3'- -CACGuCGU-----CGGCCAGU----------UGGCG--------------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.