Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26542 | 5' | -60.5 | NC_005357.1 | + | 38000 | 0.71 | 0.167822 |
Target: 5'- gGUGUuGCGGCCGGguaCGACCuacgacUGCCGCa -3' miRNA: 3'- -CACGuCGUCGGCCa--GUUGGc-----GCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 16614 | 0.7 | 0.183876 |
Target: 5'- --aCGGCGGcCCGGUgcagaucaacgauacCGAgCGCGCCGCg -3' miRNA: 3'- cacGUCGUC-GGCCA---------------GUUgGCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 32806 | 0.7 | 0.185356 |
Target: 5'- gGUGCuGCGcgucuGCCGGUCGgacuacaccaGCCGCaacggcuucgccugGCCGCa -3' miRNA: 3'- -CACGuCGU-----CGGCCAGU----------UGGCG--------------CGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 20667 | 0.7 | 0.186846 |
Target: 5'- cGUGCcgGGCGGCCuGUCcuauguggacgcGGCCGCGCC-Ca -3' miRNA: 3'- -CACG--UCGUCGGcCAG------------UUGGCGCGGcG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 8400 | 0.7 | 0.19189 |
Target: 5'- cUGC-GUAGCCaGUCGGCCaGgGCCGUg -3' miRNA: 3'- cACGuCGUCGGcCAGUUGG-CgCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 23188 | 0.7 | 0.19189 |
Target: 5'- gGUGCgacAGCAGCaGGUCGGCCuCGUCGg -3' miRNA: 3'- -CACG---UCGUCGgCCAGUUGGcGCGGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 21656 | 0.7 | 0.202338 |
Target: 5'- cGUGCAGCcGCgCGaugaGUCGAgCGCGgCGCa -3' miRNA: 3'- -CACGUCGuCG-GC----CAGUUgGCGCgGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 33814 | 0.7 | 0.20611 |
Target: 5'- -cGCAGCGGCCGaGaagcgCAACCaGCuuauccagcaccagGCCGCa -3' miRNA: 3'- caCGUCGUCGGC-Ca----GUUGG-CG--------------CGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 22790 | 0.7 | 0.207745 |
Target: 5'- -cGCccuGCgGGCCGGUCAGCaugGUGCCGg -3' miRNA: 3'- caCGu--CG-UCGGCCAGUUGg--CGCGGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 34522 | 0.69 | 0.212717 |
Target: 5'- -cGCaacgAGCAGCUGG-CGAUcuacgcaCGCGCCGCc -3' miRNA: 3'- caCG----UCGUCGGCCaGUUG-------GCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 18246 | 0.69 | 0.213276 |
Target: 5'- cUGCuGgAuGCCGGUCAcgACCuGCGCCGa -3' miRNA: 3'- cACGuCgU-CGGCCAGU--UGG-CGCGGCg -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 4529 | 0.69 | 0.213276 |
Target: 5'- -cGUGGCGuGCUGGgCggUCGUGCCGCc -3' miRNA: 3'- caCGUCGU-CGGCCaGuuGGCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 760 | 0.69 | 0.216655 |
Target: 5'- -cGUAGUuguucaccgucuuGCCGGUCAgAUCGgGCCGCu -3' miRNA: 3'- caCGUCGu------------CGGCCAGU-UGGCgCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 31699 | 0.69 | 0.218933 |
Target: 5'- cUGCAGCAccGCCuGacCAGCC-CGCCGCg -3' miRNA: 3'- cACGUCGU--CGGcCa-GUUGGcGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 24811 | 0.69 | 0.218933 |
Target: 5'- aUGCGGCAaacaucgagGCCGGUaucgacaacgcgCAGCCGUuuaGCUGCg -3' miRNA: 3'- cACGUCGU---------CGGCCA------------GUUGGCG---CGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 23750 | 0.69 | 0.218933 |
Target: 5'- -aGCAGCGccauGCCGGcgCcACCgggccgauGCGCCGCg -3' miRNA: 3'- caCGUCGU----CGGCCa-GuUGG--------CGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 40965 | 0.69 | 0.230632 |
Target: 5'- cUGcCAGgaGGCCGc-CGACCGCGCCGUc -3' miRNA: 3'- cAC-GUCg-UCGGCcaGUUGGCGCGGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 3564 | 0.69 | 0.235457 |
Target: 5'- -cGCAGCAGCgGGcugggcguacacCGAuCCGCGgCCGCc -3' miRNA: 3'- caCGUCGUCGgCCa-----------GUU-GGCGC-GGCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 13298 | 0.69 | 0.236677 |
Target: 5'- uUGCAGCGcGCCGGg--GCCgGCGuuGUa -3' miRNA: 3'- cACGUCGU-CGGCCaguUGG-CGCggCG- -5' |
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26542 | 5' | -60.5 | NC_005357.1 | + | 25486 | 0.69 | 0.236677 |
Target: 5'- -gGCGGCAcGCUGcUgGACgGCGCCGUg -3' miRNA: 3'- caCGUCGU-CGGCcAgUUGgCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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