miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 9874 0.7 0.264821
Target:  5'- aCCGGCGCGcugcuucucGGCCAGG-CGCgUg-GCGa -3'
miRNA:   3'- -GGCCGCGC---------UUGGUCCuGCGgAagCGC- -5'
26562 3' -59.1 NC_005357.1 + 34887 0.7 0.27423
Target:  5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaacgCGCGc -3'
miRNA:   3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 34499 0.7 0.278344
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 25341 0.7 0.284606
Target:  5'- cCCGGC-CGAgaaccgcGCCGGcuuCGCCUUCGUGc -3'
miRNA:   3'- -GGCCGcGCU-------UGGUCcu-GCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 24648 0.69 0.29965
Target:  5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3'
miRNA:   3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 25322 0.69 0.29965
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 14722 0.69 0.307027
Target:  5'- aCCGGCgGCGAGCCGc--UGCCggCGCGc -3'
miRNA:   3'- -GGCCG-CGCUUGGUccuGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 20317 0.69 0.307027
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 14971 0.69 0.311519
Target:  5'- gCGGCGCGcuggcauaccagcGCCAGGGCcugcggccGCCgggCGCGg -3'
miRNA:   3'- gGCCGCGCu------------UGGUCCUG--------CGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 42149 0.69 0.322195
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26562 3' -59.1 NC_005357.1 + 23423 0.69 0.322195
Target:  5'- gCCGGUcaguGCGAcgccgGCCGGGAUGCggauggUUCGCGc -3'
miRNA:   3'- -GGCCG----CGCU-----UGGUCCUGCGg-----AAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 28721 0.69 0.329987
Target:  5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3'
miRNA:   3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 9733 0.69 0.329987
Target:  5'- gCCGcGgGCGAACUgcucgugguGGGCGCgCUUCGCc -3'
miRNA:   3'- -GGC-CgCGCUUGGu--------CCUGCG-GAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 4671 0.69 0.329987
Target:  5'- uUGGCGgGcACCAGcGCGCCggauagCGCGg -3'
miRNA:   3'- gGCCGCgCuUGGUCcUGCGGaa----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 3852 0.69 0.337917
Target:  5'- cUCGGCGaaguuguACCAGG-CGCCgUCGCu -3'
miRNA:   3'- -GGCCGCgcu----UGGUCCuGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 14594 0.69 0.337917
Target:  5'- gCGGCGCG-GCC-GG-CGCCacCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGuCCuGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 37275 0.68 0.345984
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 38044 0.68 0.345984
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26562 3' -59.1 NC_005357.1 + 40915 0.68 0.345984
Target:  5'- -gGGCGCGAAUaagGGGGCGCCaugUC-CGa -3'
miRNA:   3'- ggCCGCGCUUGg--UCCUGCGGa--AGcGC- -5'
26562 3' -59.1 NC_005357.1 + 9009 0.68 0.354189
Target:  5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3'
miRNA:   3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.