miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26572 5' -55.8 NC_005357.1 + 25036 1.08 0.000901
Target:  5'- uCAAACCACGUGUCGCGCGAUCCGCCGu -3'
miRNA:   3'- -GUUUGGUGCACAGCGCGCUAGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 30263 0.76 0.178919
Target:  5'- -uAGCUGCGcugGUCGCGCGAgUCGCCGg -3'
miRNA:   3'- guUUGGUGCa--CAGCGCGCUaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 30348 0.75 0.204791
Target:  5'- -uGGCCuuGUcGUCGCGCGAgaacCCGCCGc -3'
miRNA:   3'- guUUGGugCA-CAGCGCGCUa---GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 41267 0.74 0.246402
Target:  5'- gAGACUAUGUGggGCGUGA-CCGCCGc -3'
miRNA:   3'- gUUUGGUGCACagCGCGCUaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 41686 0.72 0.28744
Target:  5'- -cAACUACGUGUCG-GUcAUCCGCCa -3'
miRNA:   3'- guUUGGUGCACAGCgCGcUAGGCGGc -5'
26572 5' -55.8 NC_005357.1 + 18407 0.72 0.309898
Target:  5'- -cGGCCACGUcggcgaagGUgGCGUuGUCCGCCGa -3'
miRNA:   3'- guUUGGUGCA--------CAgCGCGcUAGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 18972 0.71 0.333669
Target:  5'- cCAcGCCgGCGUGUaCGCGCGAaccaUCCGCa- -3'
miRNA:   3'- -GUuUGG-UGCACA-GCGCGCU----AGGCGgc -5'
26572 5' -55.8 NC_005357.1 + 29586 0.71 0.350244
Target:  5'- -cGGCCGCGcccaggCGCGCGGUuuGCCa -3'
miRNA:   3'- guUUGGUGCaca---GCGCGCUAggCGGc -5'
26572 5' -55.8 NC_005357.1 + 33856 0.71 0.367396
Target:  5'- -uGACCGuCGUGUCGCGCcugUCGCUGc -3'
miRNA:   3'- guUUGGU-GCACAGCGCGcuaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 32341 0.71 0.367396
Target:  5'- aCAAccGCCGCccagGUCGCuGCGGUcgCCGCCGa -3'
miRNA:   3'- -GUU--UGGUGca--CAGCG-CGCUA--GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 34807 0.7 0.375301
Target:  5'- aAGGCCACGUGUCcggcgcuGCGCGAccacgugcugUCCaCCGu -3'
miRNA:   3'- gUUUGGUGCACAG-------CGCGCU----------AGGcGGC- -5'
26572 5' -55.8 NC_005357.1 + 13746 0.7 0.393275
Target:  5'- uGAACgACGUGgcgCGCcgcgcugGCGAggCCGCCGg -3'
miRNA:   3'- gUUUGgUGCACa--GCG-------CGCUa-GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 19320 0.7 0.422212
Target:  5'- --uACCGC-UGUCGcCGUGGgcgCCGCCGu -3'
miRNA:   3'- guuUGGUGcACAGC-GCGCUa--GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 17229 0.69 0.435694
Target:  5'- cCGGGCCAgCG-GUCGCGCGugcucaugacauucaAcCCGCCGa -3'
miRNA:   3'- -GUUUGGU-GCaCAGCGCGC---------------UaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 40157 0.69 0.451401
Target:  5'- gCGAACCcaucgucaACGUGgugCGCGuCGAaCUGCCGg -3'
miRNA:   3'- -GUUUGG--------UGCACa--GCGC-GCUaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 966 0.69 0.451401
Target:  5'- uCGAGCCACGUGUCGagccaGCccuucaCCGUCGc -3'
miRNA:   3'- -GUUUGGUGCACAGCg----CGcua---GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 24579 0.68 0.481661
Target:  5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3'
miRNA:   3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5'
26572 5' -55.8 NC_005357.1 + 26161 0.68 0.491965
Target:  5'- ---uCCGgGUGgccgCGCGCGAggccaacgccaUCCGCCa -3'
miRNA:   3'- guuuGGUgCACa---GCGCGCU-----------AGGCGGc -5'
26572 5' -55.8 NC_005357.1 + 22930 0.68 0.50237
Target:  5'- aAGACCACGguUCGCaGCGGcCUGCCa -3'
miRNA:   3'- gUUUGGUGCacAGCG-CGCUaGGCGGc -5'
26572 5' -55.8 NC_005357.1 + 27698 0.68 0.52346
Target:  5'- aCAGGCCGCGcGcCGgcaGCGGcucgCCGCCGg -3'
miRNA:   3'- -GUUUGGUGCaCaGCg--CGCUa---GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.