Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26572 | 5' | -55.8 | NC_005357.1 | + | 24543 | 0.66 | 0.632679 |
Target: 5'- -uGACCGCGUgGUCGCGCaGcgCgGCg- -3' miRNA: 3'- guUUGGUGCA-CAGCGCG-CuaGgCGgc -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 1034 | 0.68 | 0.533061 |
Target: 5'- aAGGCCACGgccggcggcagcaUGUCGcCGCGAaCCGgCGu -3' miRNA: 3'- gUUUGGUGC-------------ACAGC-GCGCUaGGCgGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 32292 | 0.67 | 0.577508 |
Target: 5'- --cACCAgCGcGUUGCGCGAccucaucgCCGCCa -3' miRNA: 3'- guuUGGU-GCaCAGCGCGCUa-------GGCGGc -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 36812 | 0.67 | 0.577508 |
Target: 5'- --cGCCGCGccaCGCGCGAaacgcaccCCGCCGa -3' miRNA: 3'- guuUGGUGCacaGCGCGCUa-------GGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 2338 | 0.67 | 0.599502 |
Target: 5'- aGAAgUGCGUGgCGCGCG-UgCGCCGc -3' miRNA: 3'- gUUUgGUGCACaGCGCGCuAgGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 1096 | 0.66 | 0.610545 |
Target: 5'- --uGCCuuggcCGUGUCGCGCGGcaugucgcgcaUCgGCCc -3' miRNA: 3'- guuUGGu----GCACAGCGCGCU-----------AGgCGGc -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 24652 | 0.66 | 0.620501 |
Target: 5'- gCGGGCCAgGaugguguUGUCGCGC---CCGCCGc -3' miRNA: 3'- -GUUUGGUgC-------ACAGCGCGcuaGGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 10859 | 0.66 | 0.620501 |
Target: 5'- gCAGGCCcuGCGUggcuucgGUCgGCGCGAUgCGCgCGg -3' miRNA: 3'- -GUUUGG--UGCA-------CAG-CGCGCUAgGCG-GC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 9394 | 0.66 | 0.621608 |
Target: 5'- -cAGCCACugcaUGUCGCGCaggCCGCgGg -3' miRNA: 3'- guUUGGUGc---ACAGCGCGcuaGGCGgC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 27698 | 0.68 | 0.52346 |
Target: 5'- aCAGGCCGCGcGcCGgcaGCGGcucgCCGCCGg -3' miRNA: 3'- -GUUUGGUGCaCaGCg--CGCUa---GGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 24579 | 0.68 | 0.481661 |
Target: 5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3' miRNA: 3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 40157 | 0.69 | 0.451401 |
Target: 5'- gCGAACCcaucgucaACGUGgugCGCGuCGAaCUGCCGg -3' miRNA: 3'- -GUUUGG--------UGCACa--GCGC-GCUaGGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 30263 | 0.76 | 0.178919 |
Target: 5'- -uAGCUGCGcugGUCGCGCGAgUCGCCGg -3' miRNA: 3'- guUUGGUGCa--CAGCGCGCUaGGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 30348 | 0.75 | 0.204791 |
Target: 5'- -uGGCCuuGUcGUCGCGCGAgaacCCGCCGc -3' miRNA: 3'- guUUGGugCA-CAGCGCGCUa---GGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 41686 | 0.72 | 0.28744 |
Target: 5'- -cAACUACGUGUCG-GUcAUCCGCCa -3' miRNA: 3'- guUUGGUGCACAGCgCGcUAGGCGGc -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 18407 | 0.72 | 0.309898 |
Target: 5'- -cGGCCACGUcggcgaagGUgGCGUuGUCCGCCGa -3' miRNA: 3'- guUUGGUGCA--------CAgCGCGcUAGGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 29586 | 0.71 | 0.350244 |
Target: 5'- -cGGCCGCGcccaggCGCGCGGUuuGCCa -3' miRNA: 3'- guUUGGUGCaca---GCGCGCUAggCGGc -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 33856 | 0.71 | 0.367396 |
Target: 5'- -uGACCGuCGUGUCGCGCcugUCGCUGc -3' miRNA: 3'- guUUGGU-GCACAGCGCGcuaGGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 32341 | 0.71 | 0.367396 |
Target: 5'- aCAAccGCCGCccagGUCGCuGCGGUcgCCGCCGa -3' miRNA: 3'- -GUU--UGGUGca--CAGCG-CGCUA--GGCGGC- -5' |
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26572 | 5' | -55.8 | NC_005357.1 | + | 34807 | 0.7 | 0.375301 |
Target: 5'- aAGGCCACGUGUCcggcgcuGCGCGAccacgugcugUCCaCCGu -3' miRNA: 3'- gUUUGGUGCACAG-------CGCGCU----------AGGcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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