miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26572 5' -55.8 NC_005357.1 + 966 0.69 0.451401
Target:  5'- uCGAGCCACGUGUCGagccaGCccuucaCCGUCGc -3'
miRNA:   3'- -GUUUGGUGCACAGCg----CGcua---GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 1034 0.68 0.533061
Target:  5'- aAGGCCACGgccggcggcagcaUGUCGcCGCGAaCCGgCGu -3'
miRNA:   3'- gUUUGGUGC-------------ACAGC-GCGCUaGGCgGC- -5'
26572 5' -55.8 NC_005357.1 + 1096 0.66 0.610545
Target:  5'- --uGCCuuggcCGUGUCGCGCGGcaugucgcgcaUCgGCCc -3'
miRNA:   3'- guuUGGu----GCACAGCGCGCU-----------AGgCGGc -5'
26572 5' -55.8 NC_005357.1 + 2338 0.67 0.599502
Target:  5'- aGAAgUGCGUGgCGCGCG-UgCGCCGc -3'
miRNA:   3'- gUUUgGUGCACaGCGCGCuAgGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 2574 0.67 0.54488
Target:  5'- -cGGCCcagcGCGUG-CGCGCGcuugCCGCCc -3'
miRNA:   3'- guUUGG----UGCACaGCGCGCua--GGCGGc -5'
26572 5' -55.8 NC_005357.1 + 9394 0.66 0.621608
Target:  5'- -cAGCCACugcaUGUCGCGCaggCCGCgGg -3'
miRNA:   3'- guUUGGUGc---ACAGCGCGcuaGGCGgC- -5'
26572 5' -55.8 NC_005357.1 + 10859 0.66 0.620501
Target:  5'- gCAGGCCcuGCGUggcuucgGUCgGCGCGAUgCGCgCGg -3'
miRNA:   3'- -GUUUGG--UGCA-------CAG-CGCGCUAgGCG-GC- -5'
26572 5' -55.8 NC_005357.1 + 13746 0.7 0.393275
Target:  5'- uGAACgACGUGgcgCGCcgcgcugGCGAggCCGCCGg -3'
miRNA:   3'- gUUUGgUGCACa--GCG-------CGCUa-GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 17229 0.69 0.435694
Target:  5'- cCGGGCCAgCG-GUCGCGCGugcucaugacauucaAcCCGCCGa -3'
miRNA:   3'- -GUUUGGU-GCaCAGCGCGC---------------UaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 18346 0.67 0.599502
Target:  5'- --uGCC-CGUGcccCGCGCGGUC-GCCGc -3'
miRNA:   3'- guuUGGuGCACa--GCGCGCUAGgCGGC- -5'
26572 5' -55.8 NC_005357.1 + 18407 0.72 0.309898
Target:  5'- -cGGCCACGUcggcgaagGUgGCGUuGUCCGCCGa -3'
miRNA:   3'- guUUGGUGCA--------CAgCGCGcUAGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 18972 0.71 0.333669
Target:  5'- cCAcGCCgGCGUGUaCGCGCGAaccaUCCGCa- -3'
miRNA:   3'- -GUuUGG-UGCACA-GCGCGCU----AGGCGgc -5'
26572 5' -55.8 NC_005357.1 + 18975 0.66 0.653705
Target:  5'- gCGGACgACGUaacgccaGUCGCGCagGGUCagGCCGa -3'
miRNA:   3'- -GUUUGgUGCA-------CAGCGCG--CUAGg-CGGC- -5'
26572 5' -55.8 NC_005357.1 + 19320 0.7 0.422212
Target:  5'- --uACCGC-UGUCGcCGUGGgcgCCGCCGu -3'
miRNA:   3'- guuUGGUGcACAGC-GCGCUa--GGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 20241 0.67 0.599502
Target:  5'- cCAGAUCACG-GUCGCGCagauGGUgCGCg- -3'
miRNA:   3'- -GUUUGGUGCaCAGCGCG----CUAgGCGgc -5'
26572 5' -55.8 NC_005357.1 + 22930 0.68 0.50237
Target:  5'- aAGACCACGguUCGCaGCGGcCUGCCa -3'
miRNA:   3'- gUUUGGUGCacAGCG-CGCUaGGCGGc -5'
26572 5' -55.8 NC_005357.1 + 24543 0.66 0.632679
Target:  5'- -uGACCGCGUgGUCGCGCaGcgCgGCg- -3'
miRNA:   3'- guUUGGUGCA-CAGCGCG-CuaGgCGgc -5'
26572 5' -55.8 NC_005357.1 + 24579 0.68 0.481661
Target:  5'- -cGGCCACG-GUCGgGCcGUCCGgCGu -3'
miRNA:   3'- guUUGGUGCaCAGCgCGcUAGGCgGC- -5'
26572 5' -55.8 NC_005357.1 + 24652 0.66 0.620501
Target:  5'- gCGGGCCAgGaugguguUGUCGCGC---CCGCCGc -3'
miRNA:   3'- -GUUUGGUgC-------ACAGCGCGcuaGGCGGC- -5'
26572 5' -55.8 NC_005357.1 + 25036 1.08 0.000901
Target:  5'- uCAAACCACGUGUCGCGCGAUCCGCCGu -3'
miRNA:   3'- -GUUUGGUGCACAGCGCGCUAGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.