Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26578 | 3' | -54.9 | NC_005357.1 | + | 9433 | 0.66 | 0.678986 |
Target: 5'- uGUCGCUGGgCACUuccagcaCGUaCCACuuGGCg -3' miRNA: 3'- -CAGCGGCUgGUGA-------GCAgGGUGuuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 29246 | 0.66 | 0.668975 |
Target: 5'- -aCGCCGGCCAagggCG-CCCAgCGcGGCc -3' miRNA: 3'- caGCGGCUGGUga--GCaGGGU-GUuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 40976 | 0.66 | 0.678986 |
Target: 5'- -cCGCCGACCGCgcCGUCaagaagguguuugCCAUcuuGGGCg -3' miRNA: 3'- caGCGGCUGGUGa-GCAG-------------GGUGu--UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 17989 | 0.66 | 0.69117 |
Target: 5'- uGUCGCCGagGCCGCgcgCGgcaCCgACAAaucgGGCc -3' miRNA: 3'- -CAGCGGC--UGGUGa--GCa--GGgUGUU----UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8396 | 0.66 | 0.680096 |
Target: 5'- aUCGCCGcCCACgUGUCggGCAgcGAGCa -3' miRNA: 3'- cAGCGGCuGGUGaGCAGggUGU--UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 13545 | 0.66 | 0.646637 |
Target: 5'- uGUCgGCCG-CCugACUCGgugCCCAC--GGCg -3' miRNA: 3'- -CAG-CGGCuGG--UGAGCa--GGGUGuuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 40562 | 0.66 | 0.69117 |
Target: 5'- -gCGCCGGCCACgggCugaaCCUGCAAgacGGCg -3' miRNA: 3'- caGCGGCUGGUGa--Gca--GGGUGUU---UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 25046 | 0.66 | 0.680096 |
Target: 5'- uGUCGCgCGAuCCGC-CGUUaCCAUcgGGCa -3' miRNA: 3'- -CAGCG-GCU-GGUGaGCAG-GGUGuuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 30095 | 0.66 | 0.668975 |
Target: 5'- -gCGCCacGGCC-CUUGUCCCA---GGCg -3' miRNA: 3'- caGCGG--CUGGuGAGCAGGGUguuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 4388 | 0.66 | 0.646637 |
Target: 5'- --gGCCGACUugUCGgCCUugAugaAAGCc -3' miRNA: 3'- cagCGGCUGGugAGCaGGGugU---UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8420 | 0.66 | 0.680096 |
Target: 5'- --gGCCGugCGCUUGUCuacggCCuuGAGGCu -3' miRNA: 3'- cagCGGCugGUGAGCAG-----GGugUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 39778 | 0.66 | 0.646637 |
Target: 5'- --gGgCGACCGCUgGcccUUCCGCAAAGUg -3' miRNA: 3'- cagCgGCUGGUGAgC---AGGGUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 38122 | 0.67 | 0.57962 |
Target: 5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3' miRNA: 3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8524 | 0.67 | 0.57962 |
Target: 5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3' miRNA: 3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 40833 | 0.67 | 0.601878 |
Target: 5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3' miRNA: 3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 13123 | 0.67 | 0.590731 |
Target: 5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3' miRNA: 3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 31567 | 0.67 | 0.57962 |
Target: 5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3' miRNA: 3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 18131 | 0.67 | 0.57962 |
Target: 5'- cUCGCCGACCucAC-CGccCCCACGuGGUc -3' miRNA: 3'- cAGCGGCUGG--UGaGCa-GGGUGUuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 356 | 0.67 | 0.57962 |
Target: 5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3' miRNA: 3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 37735 | 0.67 | 0.601878 |
Target: 5'- cUUGCCGGCCAUUC-UCgCCGCGcuauccGGCg -3' miRNA: 3'- cAGCGGCUGGUGAGcAG-GGUGUu-----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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