Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26578 | 3' | -54.9 | NC_005357.1 | + | 356 | 0.67 | 0.57962 |
Target: 5'- cUCGCCGACCauccggguguGCUUGgCCUGCcgauuGAGCg -3' miRNA: 3'- cAGCGGCUGG----------UGAGCaGGGUGu----UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 940 | 0.68 | 0.524904 |
Target: 5'- --gGCCGAUCugUcCGUCCUGCGcGGUg -3' miRNA: 3'- cagCGGCUGGugA-GCAGGGUGUuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 2763 | 0.69 | 0.502494 |
Target: 5'- -gUGCCGACCACUgccgacaccucgaCGUUgCGCAGGuGCg -3' miRNA: 3'- caGCGGCUGGUGA-------------GCAGgGUGUUU-CG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 3634 | 0.68 | 0.535708 |
Target: 5'- -aCGCCG-CCgaACUCGUuacCCCACGuccacAAGCa -3' miRNA: 3'- caGCGGCuGG--UGAGCA---GGGUGU-----UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 4017 | 0.72 | 0.341219 |
Target: 5'- -gCGCCGGCCACcagCGUCaugCCGCGcgggucGAGCg -3' miRNA: 3'- caGCGGCUGGUGa--GCAG---GGUGU------UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 4388 | 0.66 | 0.646637 |
Target: 5'- --gGCCGACUugUCGgCCUugAugaAAGCc -3' miRNA: 3'- cagCGGCUGGugAGCaGGGugU---UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 4568 | 0.67 | 0.624243 |
Target: 5'- aGUCGCCGaggcGCUGCUCGgUgCGCcAGGCg -3' miRNA: 3'- -CAGCGGC----UGGUGAGCaGgGUGuUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 5203 | 0.71 | 0.403388 |
Target: 5'- aUUGCCGGCUAC-CGUgCCCACGucGAGg -3' miRNA: 3'- cAGCGGCUGGUGaGCA-GGGUGU--UUCg -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 5322 | 0.69 | 0.482587 |
Target: 5'- gGUCGCCGGCCACggauaCCACGcuGUc -3' miRNA: 3'- -CAGCGGCUGGUGagcagGGUGUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 6416 | 0.67 | 0.601878 |
Target: 5'- uGUCGUCGA--ACUCGUCCuCGCuc-GCg -3' miRNA: 3'- -CAGCGGCUggUGAGCAGG-GUGuuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 7348 | 0.69 | 0.493018 |
Target: 5'- -gCGUCGAucaaCCACUCGUgCCACGccAGGUc -3' miRNA: 3'- caGCGGCU----GGUGAGCAgGGUGU--UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 7912 | 0.72 | 0.349663 |
Target: 5'- aUCGCCaGCUGCUCGUUgCGCucGGCg -3' miRNA: 3'- cAGCGGcUGGUGAGCAGgGUGuuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8396 | 0.66 | 0.680096 |
Target: 5'- aUCGCCGcCCACgUGUCggGCAgcGAGCa -3' miRNA: 3'- cAGCGGCuGGUGaGCAGggUGU--UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8420 | 0.66 | 0.680096 |
Target: 5'- --gGCCGugCGCUUGUCuacggCCuuGAGGCu -3' miRNA: 3'- cagCGGCugGUGAGCAG-----GGugUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8524 | 0.67 | 0.57962 |
Target: 5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3' miRNA: 3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8647 | 0.68 | 0.54659 |
Target: 5'- gGUCGCCGGCC-UUCaUCgCGCGGucGGCa -3' miRNA: 3'- -CAGCGGCUGGuGAGcAGgGUGUU--UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8847 | 0.71 | 0.384907 |
Target: 5'- -aCGCgGGCCAgcgcguuggcCUCgGUCgCCACGAAGCg -3' miRNA: 3'- caGCGgCUGGU----------GAG-CAG-GGUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 9433 | 0.66 | 0.678986 |
Target: 5'- uGUCGCUGGgCACUuccagcaCGUaCCACuuGGCg -3' miRNA: 3'- -CAGCGGCUgGUGA-------GCAgGGUGuuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 9579 | 0.68 | 0.54659 |
Target: 5'- -gCGCCGACCGuCUgCGgCCagGCGAAGCc -3' miRNA: 3'- caGCGGCUGGU-GA-GCaGGg-UGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 13123 | 0.67 | 0.590731 |
Target: 5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3' miRNA: 3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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