Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26578 | 3' | -54.9 | NC_005357.1 | + | 17999 | 0.67 | 0.601878 |
Target: 5'- aGUCGCCgccgGACUugUCGUCCgAaccuuGCg -3' miRNA: 3'- -CAGCGG----CUGGugAGCAGGgUguuu-CG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 33848 | 0.69 | 0.49722 |
Target: 5'- gGUCGCCGugaccgucgugucgcGCCugUCGcugCCCGCcaucGGCg -3' miRNA: 3'- -CAGCGGC---------------UGGugAGCa--GGGUGuu--UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 21334 | 0.69 | 0.514183 |
Target: 5'- -aUGCCGGCCACcgCG-CCCAgGuuGCc -3' miRNA: 3'- caGCGGCUGGUGa-GCaGGGUgUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 940 | 0.68 | 0.524904 |
Target: 5'- --gGCCGAUCugUcCGUCCUGCGcGGUg -3' miRNA: 3'- cagCGGCUGGugA-GCAGGGUGUuUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 3634 | 0.68 | 0.535708 |
Target: 5'- -aCGCCG-CCgaACUCGUuacCCCACGuccacAAGCa -3' miRNA: 3'- caGCGGCuGG--UGAGCA---GGGUGU-----UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8647 | 0.68 | 0.54659 |
Target: 5'- gGUCGCCGGCC-UUCaUCgCGCGGucGGCa -3' miRNA: 3'- -CAGCGGCUGGuGAGcAGgGUGUU--UCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8524 | 0.67 | 0.57962 |
Target: 5'- uGUCGCCGGCgaACUUG-CCCAggUAucGCa -3' miRNA: 3'- -CAGCGGCUGg-UGAGCaGGGU--GUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 38122 | 0.67 | 0.57962 |
Target: 5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3' miRNA: 3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 13123 | 0.67 | 0.590731 |
Target: 5'- gGUUGCCGGCCAggcgugggUCGUUCUGCAAcuGCg -3' miRNA: 3'- -CAGCGGCUGGUg-------AGCAGGGUGUUu-CG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 7348 | 0.69 | 0.493018 |
Target: 5'- -gCGUCGAucaaCCACUCGUgCCACGccAGGUc -3' miRNA: 3'- caGCGGCU----GGUGAGCAgGGUGU--UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 5322 | 0.69 | 0.482587 |
Target: 5'- gGUCGCCGGCCACggauaCCACGcuGUc -3' miRNA: 3'- -CAGCGGCUGGUGagcagGGUGUuuCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 21937 | 0.69 | 0.462051 |
Target: 5'- -cCGCCGACCAa--GgCCCaACGGGGCa -3' miRNA: 3'- caGCGGCUGGUgagCaGGG-UGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 4017 | 0.72 | 0.341219 |
Target: 5'- -gCGCCGGCCACcagCGUCaugCCGCGcgggucGAGCg -3' miRNA: 3'- caGCGGCUGGUGa--GCAG---GGUGU------UUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 32637 | 0.71 | 0.366994 |
Target: 5'- gGUCGCUGuCCugUCGaaguucggCgCCGCGAAGCu -3' miRNA: 3'- -CAGCGGCuGGugAGCa-------G-GGUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 27759 | 0.71 | 0.373197 |
Target: 5'- cUCGCUG-CC-CUCGUCCggcucggacacguaCACGAAGCg -3' miRNA: 3'- cAGCGGCuGGuGAGCAGG--------------GUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 37524 | 0.71 | 0.375878 |
Target: 5'- cGUCGCCGACCugUCGaa-CAuCGAAGg -3' miRNA: 3'- -CAGCGGCUGGugAGCaggGU-GUUUCg -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 8847 | 0.71 | 0.384907 |
Target: 5'- -aCGCgGGCCAgcgcguuggcCUCgGUCgCCACGAAGCg -3' miRNA: 3'- caGCGgCUGGU----------GAG-CAG-GGUGUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 20513 | 0.71 | 0.384907 |
Target: 5'- --aGCCGguacacGCCgGCUCGUUCCAgAAAGCg -3' miRNA: 3'- cagCGGC------UGG-UGAGCAGGGUgUUUCG- -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 5203 | 0.71 | 0.403388 |
Target: 5'- aUUGCCGGCUAC-CGUgCCCACGucGAGg -3' miRNA: 3'- cAGCGGCUGGUGaGCA-GGGUGU--UUCg -5' |
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26578 | 3' | -54.9 | NC_005357.1 | + | 29337 | 0.7 | 0.412838 |
Target: 5'- gGUCGCCGGCCAagucCUCGaaCCACGcgccgguGGCc -3' miRNA: 3'- -CAGCGGCUGGU----GAGCagGGUGUu------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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