miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2658 5' -54.8 NC_001491.2 + 109281 0.66 0.941878
Target:  5'- cAGCUUGCUCAacacguccaucuCGGCGUugAauuccGuGUACCa -3'
miRNA:   3'- aUUGAGCGAGU------------GCCGCAugU-----C-CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 107433 0.66 0.941878
Target:  5'- -uACUCGUgc-UGGCGUGuCAGGUccaGCCg -3'
miRNA:   3'- auUGAGCGaguGCCGCAU-GUCCG---UGG- -5'
2658 5' -54.8 NC_001491.2 + 23184 0.66 0.932068
Target:  5'- ---aUC-CUC-UGuGCGUGCAGGUACCg -3'
miRNA:   3'- auugAGcGAGuGC-CGCAUGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 103482 0.66 0.926795
Target:  5'- aAACUCGCggacguuguUUugGGCGUuuccgucuaAgGGGCACa -3'
miRNA:   3'- aUUGAGCG---------AGugCCGCA---------UgUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 138131 0.66 0.926254
Target:  5'- ----gUGCUCACugacguaGGUGUACGGGUugCc -3'
miRNA:   3'- auugaGCGAGUG-------CCGCAUGUCCGugG- -5'
2658 5' -54.8 NC_001491.2 + 112850 0.66 0.921277
Target:  5'- gGGCUCGCUCuCGGUGggACc-GCACg -3'
miRNA:   3'- aUUGAGCGAGuGCCGCa-UGucCGUGg -5'
2658 5' -54.8 NC_001491.2 + 64791 0.66 0.921277
Target:  5'- aGAgUCGgaCGCGuGUGccccGCGGGCACCc -3'
miRNA:   3'- aUUgAGCgaGUGC-CGCa---UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 68540 0.66 0.915514
Target:  5'- aGACgUGCUgGgGGCGacGCuGGCACCg -3'
miRNA:   3'- aUUGaGCGAgUgCCGCa-UGuCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 3975 0.66 0.915514
Target:  5'- cGGCg-GCUCAUGGCcacCAGGCgGCCg -3'
miRNA:   3'- aUUGagCGAGUGCCGcauGUCCG-UGG- -5'
2658 5' -54.8 NC_001491.2 + 112612 0.67 0.909506
Target:  5'- cUGACUUGU--GCGGCa-GCGGGUGCCa -3'
miRNA:   3'- -AUUGAGCGagUGCCGcaUGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 1345 0.67 0.909506
Target:  5'- gAGCUCGUcgUCG-GGCuccgGCAGGCACa -3'
miRNA:   3'- aUUGAGCG--AGUgCCGca--UGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 1483 0.67 0.909506
Target:  5'- gGGCUCgGC-CuCGGCGU-CGGGCuCCa -3'
miRNA:   3'- aUUGAG-CGaGuGCCGCAuGUCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 55688 0.67 0.890042
Target:  5'- aUAACUCGC-CAUGGCacgACGGGgAgCa -3'
miRNA:   3'- -AUUGAGCGaGUGCCGca-UGUCCgUgG- -5'
2658 5' -54.8 NC_001491.2 + 64221 0.67 0.890042
Target:  5'- cAACUCGgcaGCGGCGUcaaacgcggccACGGGCGgCg -3'
miRNA:   3'- aUUGAGCgagUGCCGCA-----------UGUCCGUgG- -5'
2658 5' -54.8 NC_001491.2 + 10117 0.67 0.890042
Target:  5'- gGACgCGCUCcggaGCGGCGc-CGGGcCGCCc -3'
miRNA:   3'- aUUGaGCGAG----UGCCGCauGUCC-GUGG- -5'
2658 5' -54.8 NC_001491.2 + 12478 0.67 0.883083
Target:  5'- ----cCGC-C-CGGCGggcgGCGGGCGCCc -3'
miRNA:   3'- auugaGCGaGuGCCGCa---UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 46727 0.67 0.883083
Target:  5'- uUAGCUCGC-CAaacuCGUACuccuGGCACCg -3'
miRNA:   3'- -AUUGAGCGaGUgcc-GCAUGu---CCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 132808 0.68 0.875896
Target:  5'- aAACUCgGCgUCGuguaGGCGUAUgcuaccaagGGGCGCCa -3'
miRNA:   3'- aUUGAG-CG-AGUg---CCGCAUG---------UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 5741 0.68 0.874431
Target:  5'- gUGGCgggGUUcCGCGGCGggcgcucggacgACGGGCGCCg -3'
miRNA:   3'- -AUUGag-CGA-GUGCCGCa-----------UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 25143 0.68 0.868484
Target:  5'- cAACUCca--GCGGCGaGgAGGCGCCg -3'
miRNA:   3'- aUUGAGcgagUGCCGCaUgUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.