miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26580 5' -54.1 NC_005357.1 + 38539 0.66 0.734833
Target:  5'- aCCAaguUCGGcGGCGACGGCAGcGCg-- -3'
miRNA:   3'- -GGUgc-AGUUaCCGCUGCUGUC-CGaca -5'
26580 5' -54.1 NC_005357.1 + 14303 0.66 0.734833
Target:  5'- cCCACGUCGuugcugaacUGGCGcGCGcCuuGGCUGa -3'
miRNA:   3'- -GGUGCAGUu--------ACCGC-UGCuGu-CCGACa -5'
26580 5' -54.1 NC_005357.1 + 41427 0.66 0.72402
Target:  5'- uCC-CGgcCAGUGGCG-CGggcaGCGGGCUGa -3'
miRNA:   3'- -GGuGCa-GUUACCGCuGC----UGUCCGACa -5'
26580 5' -54.1 NC_005357.1 + 1089 0.66 0.72402
Target:  5'- gCGCGuacuUCAuguUGGCGGCGGUAGGCg-- -3'
miRNA:   3'- gGUGC----AGUu--ACCGCUGCUGUCCGaca -5'
26580 5' -54.1 NC_005357.1 + 1305 0.66 0.72402
Target:  5'- gCCGCGcCcagGGCGACGGCcaccAGGCcGa -3'
miRNA:   3'- -GGUGCaGuuaCCGCUGCUG----UCCGaCa -5'
26580 5' -54.1 NC_005357.1 + 31807 0.66 0.713112
Target:  5'- gCCuauuCGUCGAUGGuCGggaauuucuauGCGguGCAGGCUGc -3'
miRNA:   3'- -GGu---GCAGUUACC-GC-----------UGC--UGUCCGACa -5'
26580 5' -54.1 NC_005357.1 + 35975 0.66 0.713112
Target:  5'- cCUGCG-CGAcGGCGACGccuucGCGGGCgGUg -3'
miRNA:   3'- -GGUGCaGUUaCCGCUGC-----UGUCCGaCA- -5'
26580 5' -54.1 NC_005357.1 + 38032 0.66 0.702121
Target:  5'- gCACGcUCAAggcccgGcGCGACGGCGccuGGCUGc -3'
miRNA:   3'- gGUGC-AGUUa-----C-CGCUGCUGU---CCGACa -5'
26580 5' -54.1 NC_005357.1 + 15030 0.66 0.691058
Target:  5'- uCCGCGUUGGuguUGGCGAUGcccgcguugauGCGGGCa-- -3'
miRNA:   3'- -GGUGCAGUU---ACCGCUGC-----------UGUCCGaca -5'
26580 5' -54.1 NC_005357.1 + 18559 0.67 0.684391
Target:  5'- aUCACGUCGGUggaggccgcgcucgcGGUGACGGCcuGGCcGUc -3'
miRNA:   3'- -GGUGCAGUUA---------------CCGCUGCUGu-CCGaCA- -5'
26580 5' -54.1 NC_005357.1 + 34383 0.67 0.679936
Target:  5'- gCGCGUC-AUGGaCGGCGGCAaggacGGCg-- -3'
miRNA:   3'- gGUGCAGuUACC-GCUGCUGU-----CCGaca -5'
26580 5' -54.1 NC_005357.1 + 15883 0.67 0.657561
Target:  5'- gCACGuUCAAggagGGCGGCGcCAuGCUGa -3'
miRNA:   3'- gGUGC-AGUUa---CCGCUGCuGUcCGACa -5'
26580 5' -54.1 NC_005357.1 + 22224 0.67 0.657561
Target:  5'- gCCGCGggcgcugcCAAgaccgagGGCGACGACaAGGCg-- -3'
miRNA:   3'- -GGUGCa-------GUUa------CCGCUGCUG-UCCGaca -5'
26580 5' -54.1 NC_005357.1 + 10678 0.67 0.655317
Target:  5'- cCCAUGUCAaugcGUcagcgcauauuuuuaGGCGugaaaaagcccgcgcGCGGCGGGCUGg -3'
miRNA:   3'- -GGUGCAGU----UA---------------CCGC---------------UGCUGUCCGACa -5'
26580 5' -54.1 NC_005357.1 + 5995 0.67 0.646331
Target:  5'- uCUGCGUCGcucaaaAUGGCGACGACuucGCcgGUg -3'
miRNA:   3'- -GGUGCAGU------UACCGCUGCUGuc-CGa-CA- -5'
26580 5' -54.1 NC_005357.1 + 25006 0.67 0.646331
Target:  5'- gCCACuGcUCAagGGCGACGugGGcgccGCUGa -3'
miRNA:   3'- -GGUG-C-AGUuaCCGCUGCugUC----CGACa -5'
26580 5' -54.1 NC_005357.1 + 11383 0.67 0.635088
Target:  5'- gCACcUCGGUGGCGACcuGAUGGGCc-- -3'
miRNA:   3'- gGUGcAGUUACCGCUG--CUGUCCGaca -5'
26580 5' -54.1 NC_005357.1 + 7837 0.68 0.623842
Target:  5'- cCCAUGUucagcgCGAUGGUGA-GGCGGGCUu- -3'
miRNA:   3'- -GGUGCA------GUUACCGCUgCUGUCCGAca -5'
26580 5' -54.1 NC_005357.1 + 9327 0.68 0.623842
Target:  5'- gCACGUC---GGCG-CGGCGGGCg-- -3'
miRNA:   3'- gGUGCAGuuaCCGCuGCUGUCCGaca -5'
26580 5' -54.1 NC_005357.1 + 41135 0.68 0.612603
Target:  5'- cCCugGgcgCGGcGGUGugGGCGGGCa-- -3'
miRNA:   3'- -GGugCa--GUUaCCGCugCUGUCCGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.