miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 5' -60.7 NC_005357.1 + 32077 1.11 0.000153
Target:  5'- gCUCAUCGGCCCCGCCAACACGGCCGCg -3'
miRNA:   3'- -GAGUAGCCGGGGCGGUUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 28664 0.85 0.016909
Target:  5'- aUCGgugccggCGGCCUCGCCAGCGCGGCgCGCc -3'
miRNA:   3'- gAGUa------GCCGGGGCGGUUGUGCCG-GCG- -5'
26586 5' -60.7 NC_005357.1 + 16398 0.78 0.058288
Target:  5'- -gCAUCGGCgUUGCUcgaaguagGACACGGCCGCg -3'
miRNA:   3'- gaGUAGCCGgGGCGG--------UUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 5785 0.77 0.059967
Target:  5'- -cCAUCGuGUCCCGCCAuCGCGGCaGCg -3'
miRNA:   3'- gaGUAGC-CGGGGCGGUuGUGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 18671 0.77 0.067161
Target:  5'- -gCAUCGGCCCgguggCGCCGGCAUGG-CGCu -3'
miRNA:   3'- gaGUAGCCGGG-----GCGGUUGUGCCgGCG- -5'
26586 5' -60.7 NC_005357.1 + 35188 0.76 0.075184
Target:  5'- -aCAUCGGCCCgCGCCAG--UGGCCGa -3'
miRNA:   3'- gaGUAGCCGGG-GCGGUUguGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 23348 0.76 0.077112
Target:  5'- uUCGaCGGCCUCGCCGccgaugaACACGGUgGCg -3'
miRNA:   3'- gAGUaGCCGGGGCGGU-------UGUGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 41738 0.76 0.077329
Target:  5'- aUCuugggCGGCCCgGCCGGCGCcGCCGUa -3'
miRNA:   3'- gAGua---GCCGGGgCGGUUGUGcCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 17439 0.76 0.079533
Target:  5'- -gCAgUGGCCCCGCCAGCAUcgaGGCCa- -3'
miRNA:   3'- gaGUaGCCGGGGCGGUUGUG---CCGGcg -5'
26586 5' -60.7 NC_005357.1 + 1335 0.75 0.086509
Target:  5'- uUCuGUCaGCCCUGUUAugACGGCCGCc -3'
miRNA:   3'- gAG-UAGcCGGGGCGGUugUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 12008 0.74 0.099447
Target:  5'- -aCGUCGGCCa-G-CAGCGCGGCCGUg -3'
miRNA:   3'- gaGUAGCCGGggCgGUUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 31440 0.74 0.105117
Target:  5'- gCUCAUgcaaucCGGCCUgGCCgAACAggUGGCCGCa -3'
miRNA:   3'- -GAGUA------GCCGGGgCGG-UUGU--GCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 26737 0.73 0.11738
Target:  5'- -----gGGCCaCCGCCAGCGCGcCCGCu -3'
miRNA:   3'- gaguagCCGG-GGCGGUUGUGCcGGCG- -5'
26586 5' -60.7 NC_005357.1 + 25848 0.73 0.11738
Target:  5'- gUgGUCGGCCUCGuCCGGCGC-GUCGCg -3'
miRNA:   3'- gAgUAGCCGGGGC-GGUUGUGcCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 30005 0.73 0.127439
Target:  5'- -cCAUCGuGCUCCaaCuGCACGGCCGCg -3'
miRNA:   3'- gaGUAGC-CGGGGcgGuUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 40658 0.73 0.130966
Target:  5'- -gUAUCGGCCCgacgCGCCAgGCGCaGGCCGg -3'
miRNA:   3'- gaGUAGCCGGG----GCGGU-UGUG-CCGGCg -5'
26586 5' -60.7 NC_005357.1 + 32913 0.73 0.130966
Target:  5'- ----gCGGCCaCgGCCuGCACGGCUGCu -3'
miRNA:   3'- gaguaGCCGG-GgCGGuUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 11183 0.73 0.134583
Target:  5'- -aCGUC-GCCCgGCUcguAGCugGGCCGCg -3'
miRNA:   3'- gaGUAGcCGGGgCGG---UUGugCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 14130 0.72 0.138291
Target:  5'- aCUCGUCGGCCagcggcuUGCCuuC-CGGCCGUu -3'
miRNA:   3'- -GAGUAGCCGGg------GCGGuuGuGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 33192 0.72 0.138291
Target:  5'- cCUCGgcaCGGCCaCCGCUggcuaucgcGGCACGGCCa- -3'
miRNA:   3'- -GAGUa--GCCGG-GGCGG---------UUGUGCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.