miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 5' -60.7 NC_005357.1 + 11571 0.71 0.18518
Target:  5'- gUCAUCGaaGCCaugccgcccagggCCGCCGGC-UGGCCGCc -3'
miRNA:   3'- gAGUAGC--CGG-------------GGCGGUUGuGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 33192 0.72 0.138291
Target:  5'- cCUCGgcaCGGCCaCCGCUggcuaucgcGGCACGGCCa- -3'
miRNA:   3'- -GAGUa--GCCGG-GGCGG---------UUGUGCCGGcg -5'
26586 5' -60.7 NC_005357.1 + 13429 0.72 0.142093
Target:  5'- uCUCGUcccaCGGCaggCCCGCCAGCuuGGCgGCc -3'
miRNA:   3'- -GAGUA----GCCG---GGGCGGUUGugCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 16125 0.72 0.142093
Target:  5'- gUCggUGGCCCCGacguagGACuGCGGCCGCa -3'
miRNA:   3'- gAGuaGCCGGGGCgg----UUG-UGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 16264 0.72 0.142093
Target:  5'- -gCGUUGGCCUCGC--GCGCGGCCa- -3'
miRNA:   3'- gaGUAGCCGGGGCGguUGUGCCGGcg -5'
26586 5' -60.7 NC_005357.1 + 28552 0.71 0.166975
Target:  5'- cCUUG-CGGCCgCCgGCCAuCGCGGCgCGCa -3'
miRNA:   3'- -GAGUaGCCGG-GG-CGGUuGUGCCG-GCG- -5'
26586 5' -60.7 NC_005357.1 + 33070 0.71 0.171484
Target:  5'- uUCAUCGGgUCgCGCagCGACGCGGCgGCc -3'
miRNA:   3'- gAGUAGCCgGG-GCG--GUUGUGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 8105 0.71 0.171484
Target:  5'- -gCGUUugaGGCCCUGCaCcGCGCGGCCGg -3'
miRNA:   3'- gaGUAG---CCGGGGCG-GuUGUGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 32356 0.71 0.171484
Target:  5'- gUCGcugCGGUCgCCGCCGAgGCcccGGCCGCc -3'
miRNA:   3'- gAGUa--GCCGG-GGCGGUUgUG---CCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 14130 0.72 0.138291
Target:  5'- aCUCGUCGGCCagcggcuUGCCuuC-CGGCCGUu -3'
miRNA:   3'- -GAGUAGCCGGg------GCGGuuGuGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 40658 0.73 0.130966
Target:  5'- -gUAUCGGCCCgacgCGCCAgGCGCaGGCCGg -3'
miRNA:   3'- gaGUAGCCGGG----GCGGU-UGUG-CCGGCg -5'
26586 5' -60.7 NC_005357.1 + 32913 0.73 0.130966
Target:  5'- ----gCGGCCaCgGCCuGCACGGCUGCu -3'
miRNA:   3'- gaguaGCCGG-GgCGGuUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 28664 0.85 0.016909
Target:  5'- aUCGgugccggCGGCCUCGCCAGCGCGGCgCGCc -3'
miRNA:   3'- gAGUa------GCCGGGGCGGUUGUGCCG-GCG- -5'
26586 5' -60.7 NC_005357.1 + 16398 0.78 0.058288
Target:  5'- -gCAUCGGCgUUGCUcgaaguagGACACGGCCGCg -3'
miRNA:   3'- gaGUAGCCGgGGCGG--------UUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 35188 0.76 0.075184
Target:  5'- -aCAUCGGCCCgCGCCAG--UGGCCGa -3'
miRNA:   3'- gaGUAGCCGGG-GCGGUUguGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 23348 0.76 0.077112
Target:  5'- uUCGaCGGCCUCGCCGccgaugaACACGGUgGCg -3'
miRNA:   3'- gAGUaGCCGGGGCGGU-------UGUGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 17439 0.76 0.079533
Target:  5'- -gCAgUGGCCCCGCCAGCAUcgaGGCCa- -3'
miRNA:   3'- gaGUaGCCGGGGCGGUUGUG---CCGGcg -5'
26586 5' -60.7 NC_005357.1 + 12008 0.74 0.099447
Target:  5'- -aCGUCGGCCa-G-CAGCGCGGCCGUg -3'
miRNA:   3'- gaGUAGCCGGggCgGUUGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 26737 0.73 0.11738
Target:  5'- -----gGGCCaCCGCCAGCGCGcCCGCu -3'
miRNA:   3'- gaguagCCGG-GGCGGUUGUGCcGGCG- -5'
26586 5' -60.7 NC_005357.1 + 30005 0.73 0.127439
Target:  5'- -cCAUCGuGCUCCaaCuGCACGGCCGCg -3'
miRNA:   3'- gaGUAGC-CGGGGcgGuUGUGCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.