miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 5' -60.7 NC_005357.1 + 426 0.68 0.2867
Target:  5'- aUCGUCGGCCguaccUUGUCGuugggcugcuGCGCGGCCaGCu -3'
miRNA:   3'- gAGUAGCCGG-----GGCGGU----------UGUGCCGG-CG- -5'
26586 5' -60.7 NC_005357.1 + 613 0.66 0.398021
Target:  5'- --gGUCGGCCagcagcgCCGUgGACACGGCguccgGCg -3'
miRNA:   3'- gagUAGCCGG-------GGCGgUUGUGCCGg----CG- -5'
26586 5' -60.7 NC_005357.1 + 732 0.66 0.364135
Target:  5'- ----gCGGCUuuGCCGACAacgcCGGCCa- -3'
miRNA:   3'- gaguaGCCGGggCGGUUGU----GCCGGcg -5'
26586 5' -60.7 NC_005357.1 + 1125 0.67 0.330722
Target:  5'- -gCAUCGGCCcgguguaaCCGUUAGCucgcgcuACGGCgGCg -3'
miRNA:   3'- gaGUAGCCGG--------GGCGGUUG-------UGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 1194 0.7 0.225141
Target:  5'- --gGUCGGCCggguuguuggaauaaCCGCCcuCAUGGCCGa -3'
miRNA:   3'- gagUAGCCGG---------------GGCGGuuGUGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 1335 0.75 0.086509
Target:  5'- uUCuGUCaGCCCUGUUAugACGGCCGCc -3'
miRNA:   3'- gAG-UAGcCGGGGCGGUugUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 2215 0.7 0.217163
Target:  5'- cCUCGUCGGguagcaCCaCGCgCAGCAggcggcgcgUGGCCGCg -3'
miRNA:   3'- -GAGUAGCCg-----GG-GCG-GUUGU---------GCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 2721 0.7 0.211613
Target:  5'- -aCGUUGGCCggaCGCUugAGCGCGGCCcgGCg -3'
miRNA:   3'- gaGUAGCCGGg--GCGG--UUGUGCCGG--CG- -5'
26586 5' -60.7 NC_005357.1 + 3283 0.66 0.355774
Target:  5'- --aGUCGGCCCgUGCCuuuGCGauGCCGg -3'
miRNA:   3'- gagUAGCCGGG-GCGGu--UGUgcCGGCg -5'
26586 5' -60.7 NC_005357.1 + 3425 0.66 0.38475
Target:  5'- ---uUCGGCCCCGCUAcucaagaaucaggugGuCACagacGCCGCg -3'
miRNA:   3'- gaguAGCCGGGGCGGU---------------U-GUGc---CGGCG- -5'
26586 5' -60.7 NC_005357.1 + 3547 0.71 0.185669
Target:  5'- -aCcgCGcaGUCCCGCCAAC-CGcGCCGCa -3'
miRNA:   3'- gaGuaGC--CGGGGCGGUUGuGC-CGGCG- -5'
26586 5' -60.7 NC_005357.1 + 3754 0.67 0.316021
Target:  5'- -aCGUCGGUgCCGCCGcuggacguaGCcuCGGUCGUg -3'
miRNA:   3'- gaGUAGCCGgGGCGGU---------UGu-GCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 4507 0.67 0.347549
Target:  5'- uCUCAcgggCGGCgCCCGUgAACguggcgugcuggGCGGUCGUg -3'
miRNA:   3'- -GAGUa---GCCG-GGGCGgUUG------------UGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 5044 0.7 0.211613
Target:  5'- gCUCGaUGGCguCCUGCUugAGCACaGGCCGCg -3'
miRNA:   3'- -GAGUaGCCG--GGGCGG--UUGUG-CCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 5569 0.67 0.347549
Target:  5'- aUCGaCGGC---GCCAACGCuGGCCGCc -3'
miRNA:   3'- gAGUaGCCGgggCGGUUGUG-CCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 5785 0.77 0.059967
Target:  5'- -cCAUCGuGUCCCGCCAuCGCGGCaGCg -3'
miRNA:   3'- gaGUAGC-CGGGGCGGUuGUGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 6370 0.66 0.354945
Target:  5'- ----cCGGCCCaCGUCGGCAaucaggcgcaggcCGGCCGg -3'
miRNA:   3'- gaguaGCCGGG-GCGGUUGU-------------GCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 6427 0.67 0.316021
Target:  5'- gUCGUUGGCgCCUGUCAcgguCuuGGCUGCu -3'
miRNA:   3'- gAGUAGCCG-GGGCGGUu---GugCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 7652 0.67 0.33946
Target:  5'- -aCGcCGGCUCCuuGCCGuACACGcGCCGUu -3'
miRNA:   3'- gaGUaGCCGGGG--CGGU-UGUGC-CGGCG- -5'
26586 5' -60.7 NC_005357.1 + 8105 0.71 0.171484
Target:  5'- -gCGUUugaGGCCCUGCaCcGCGCGGCCGg -3'
miRNA:   3'- gaGUAG---CCGGGGCG-GuUGUGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.