Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26587 | 5' | -50.4 | NC_005357.1 | + | 32226 | 1.12 | 0.001526 |
Target: 5'- cCGAACUCACCACCACCGCAAACAAGGa -3' miRNA: 3'- -GCUUGAGUGGUGGUGGCGUUUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 13098 | 0.79 | 0.267902 |
Target: 5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3' miRNA: 3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 16431 | 0.76 | 0.355929 |
Target: 5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3' miRNA: 3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 33500 | 0.74 | 0.472921 |
Target: 5'- gCGAAUccggCACgGCCACCGCuGGCGAGa -3' miRNA: 3'- -GCUUGa---GUGgUGGUGGCGuUUGUUCc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 22579 | 0.74 | 0.483541 |
Target: 5'- cCGAACUCACCA-CGCUGCuGAACAAa- -3' miRNA: 3'- -GCUUGAGUGGUgGUGGCG-UUUGUUcc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 34223 | 0.74 | 0.494273 |
Target: 5'- aCGAACUgGCCGCCAugUCGCuGACGAacGGg -3' miRNA: 3'- -GCUUGAgUGGUGGU--GGCGuUUGUU--CC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 27103 | 0.74 | 0.494273 |
Target: 5'- -cGGCUCACCGCCugCacucaaGAGCGAGGa -3' miRNA: 3'- gcUUGAGUGGUGGugGcg----UUUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 2828 | 0.73 | 0.512761 |
Target: 5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3' miRNA: 3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 33801 | 0.73 | 0.527089 |
Target: 5'- gCGAcCUCGCCACCGCaGCGGcCGAGa -3' miRNA: 3'- -GCUuGAGUGGUGGUGgCGUUuGUUCc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 28803 | 0.72 | 0.572022 |
Target: 5'- cCGGACUUgcuGCCGCUACCGaugcugucGGCAAGGu -3' miRNA: 3'- -GCUUGAG---UGGUGGUGGCgu------UUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 30366 | 0.72 | 0.583411 |
Target: 5'- aGAACcCGCCGCUGCUGUAGGguGGGu -3' miRNA: 3'- gCUUGaGUGGUGGUGGCGUUUguUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 17191 | 0.72 | 0.606314 |
Target: 5'- cCGGGCugauuUCGCCGCCGCCGaagGAGCGuugcAGGa -3' miRNA: 3'- -GCUUG-----AGUGGUGGUGGCg--UUUGU----UCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 32867 | 0.71 | 0.628162 |
Target: 5'- cCGGauGCUCGCCACCGgcgagcagaUCGCAcuggccgAACAGGGc -3' miRNA: 3'- -GCU--UGAGUGGUGGU---------GGCGU-------UUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 6572 | 0.71 | 0.640822 |
Target: 5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3' miRNA: 3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 41277 | 0.71 | 0.652322 |
Target: 5'- gGGGCgUgACCGCCGCCGUAGcGCGAGc -3' miRNA: 3'- gCUUG-AgUGGUGGUGGCGUU-UGUUCc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 17872 | 0.71 | 0.663802 |
Target: 5'- cCGGcCUCGCCAUCGCCGCGcugcGCGAc- -3' miRNA: 3'- -GCUuGAGUGGUGGUGGCGUu---UGUUcc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 5359 | 0.71 | 0.663802 |
Target: 5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3' miRNA: 3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 21929 | 0.71 | 0.67525 |
Target: 5'- aGAugUCACCGCCgACCaagGCccAACGGGGc -3' miRNA: 3'- gCUugAGUGGUGG-UGG---CGu-UUGUUCC- -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 15816 | 0.7 | 0.686653 |
Target: 5'- ---cCUCgGCCACCACCGC--GCAGGa -3' miRNA: 3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5' |
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26587 | 5' | -50.4 | NC_005357.1 | + | 6421 | 0.7 | 0.707027 |
Target: 5'- uCGAACUCguccucgcucgcgacACCACCGcCCGCGAaggcgucgccgucgcGCAGGa -3' miRNA: 3'- -GCUUGAG---------------UGGUGGU-GGCGUU---------------UGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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