miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26587 5' -50.4 NC_005357.1 + 459 0.68 0.795407
Target:  5'- --uGCUCGCCgcgcACCACCGCuucGACAAu- -3'
miRNA:   3'- gcuUGAGUGG----UGGUGGCGu--UUGUUcc -5'
26587 5' -50.4 NC_005357.1 + 1314 0.68 0.815331
Target:  5'- aGGGCgacgGCCACCagGCCGaCAAgcGCGAGGa -3'
miRNA:   3'- gCUUGag--UGGUGG--UGGC-GUU--UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 2828 0.73 0.512761
Target:  5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3'
miRNA:   3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 4564 0.67 0.843613
Target:  5'- cCGAAgUCGCCGaggCGCUGCucggugcgccAGGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCG----------UUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 4993 0.66 0.90071
Target:  5'- ---gUUCGCCGCUACCGCAuuGAUAuuguuGGc -3'
miRNA:   3'- gcuuGAGUGGUGGUGGCGU--UUGUu----CC- -5'
26587 5' -50.4 NC_005357.1 + 5359 0.71 0.663802
Target:  5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3'
miRNA:   3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 6421 0.7 0.707027
Target:  5'- uCGAACUCguccucgcucgcgacACCACCGcCCGCGAaggcgucgccgucgcGCAGGa -3'
miRNA:   3'- -GCUUGAG---------------UGGUGGU-GGCGUU---------------UGUUCc -5'
26587 5' -50.4 NC_005357.1 + 6461 0.66 0.893389
Target:  5'- cCGAACUCACgCACCAC-GaccAUGAGGc -3'
miRNA:   3'- -GCUUGAGUG-GUGGUGgCguuUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 6572 0.71 0.640822
Target:  5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3'
miRNA:   3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 7481 0.66 0.907738
Target:  5'- aGGACUCgACCAgauCgACCGCGcccAGCAGGu -3'
miRNA:   3'- gCUUGAG-UGGU---GgUGGCGU---UUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 8741 0.66 0.907738
Target:  5'- gCGGGCgCGgCGCUACCGUcAACAuGGa -3'
miRNA:   3'- -GCUUGaGUgGUGGUGGCGuUUGUuCC- -5'
26587 5' -50.4 NC_005357.1 + 10508 0.67 0.861271
Target:  5'- uCGAGCagCGCCucgaaaCGCCGCAGGCAc-- -3'
miRNA:   3'- -GCUUGa-GUGGug----GUGGCGUUUGUucc -5'
26587 5' -50.4 NC_005357.1 + 13098 0.79 0.267902
Target:  5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3'
miRNA:   3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 13579 0.67 0.861271
Target:  5'- uGAACgcgCGCuCGCCAUCGCucACcuGGa -3'
miRNA:   3'- gCUUGa--GUG-GUGGUGGCGuuUGuuCC- -5'
26587 5' -50.4 NC_005357.1 + 13804 0.66 0.885778
Target:  5'- gGAACUgGCCgGCCucauCCGCGcccgguuCAAGGa -3'
miRNA:   3'- gCUUGAgUGG-UGGu---GGCGUuu-----GUUCC- -5'
26587 5' -50.4 NC_005357.1 + 13929 0.7 0.720469
Target:  5'- gCGAugUCGCgCAgCGCCGUGGACu-GGa -3'
miRNA:   3'- -GCUugAGUG-GUgGUGGCGUUUGuuCC- -5'
26587 5' -50.4 NC_005357.1 + 14600 0.68 0.795407
Target:  5'- -cGGC-CGgCGCCACCGCGGgcagcgcgcGCGAGGa -3'
miRNA:   3'- gcUUGaGUgGUGGUGGCGUU---------UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 15816 0.7 0.686653
Target:  5'- ---cCUCgGCCACCACCGC--GCAGGa -3'
miRNA:   3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 16431 0.76 0.355929
Target:  5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 16955 0.68 0.824984
Target:  5'- aCGAGCgCGCC-CCAUCGUGAggcGCGAGa -3'
miRNA:   3'- -GCUUGaGUGGuGGUGGCGUU---UGUUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.