miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26587 5' -50.4 NC_005357.1 + 13579 0.67 0.861271
Target:  5'- uGAACgcgCGCuCGCCAUCGCucACcuGGa -3'
miRNA:   3'- gCUUGa--GUG-GUGGUGGCGuuUGuuCC- -5'
26587 5' -50.4 NC_005357.1 + 1314 0.68 0.815331
Target:  5'- aGGGCgacgGCCACCagGCCGaCAAgcGCGAGGa -3'
miRNA:   3'- gCUUGag--UGGUGG--UGGC-GUU--UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 42187 0.68 0.834415
Target:  5'- gGGAUUCGCUACCGCCgGCccuACAAc- -3'
miRNA:   3'- gCUUGAGUGGUGGUGG-CGuu-UGUUcc -5'
26587 5' -50.4 NC_005357.1 + 26735 0.68 0.834415
Target:  5'- cCGGGC-CACCGCCagcgcgcccGCUGCGAuuccAUAAGGc -3'
miRNA:   3'- -GCUUGaGUGGUGG---------UGGCGUU----UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 19937 0.68 0.834415
Target:  5'- cCGAACUC-CUugUcgGCCGUGGACAGGc -3'
miRNA:   3'- -GCUUGAGuGGugG--UGGCGUUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 32306 0.67 0.843613
Target:  5'- gCGAcCUCAUCGCCGCCau---CAAGGc -3'
miRNA:   3'- -GCUuGAGUGGUGGUGGcguuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 32699 0.67 0.852568
Target:  5'- cCGAcguGCUCGCCGCgUGCaaucagGCGAugGAGGg -3'
miRNA:   3'- -GCU---UGAGUGGUG-GUGg-----CGUUugUUCC- -5'
26587 5' -50.4 NC_005357.1 + 39909 0.67 0.852568
Target:  5'- uCGAACUgACCGCaCGCCcagccCGAACGGGu -3'
miRNA:   3'- -GCUUGAgUGGUG-GUGGc----GUUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 32825 0.67 0.85608
Target:  5'- uCGGACUaCACCagccgcaacggcuucGCCugGCCGCAGACGGucGGc -3'
miRNA:   3'- -GCUUGA-GUGG---------------UGG--UGGCGUUUGUU--CC- -5'
26587 5' -50.4 NC_005357.1 + 40739 0.69 0.774737
Target:  5'- aCGAAUuggUCAUgGCuCGCCGCGAguccaagcGCGAGGu -3'
miRNA:   3'- -GCUUG---AGUGgUG-GUGGCGUU--------UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 18082 0.69 0.774737
Target:  5'- uGGGC-CGCCgaaGCCGgCGCGAACcAGGa -3'
miRNA:   3'- gCUUGaGUGG---UGGUgGCGUUUGuUCC- -5'
26587 5' -50.4 NC_005357.1 + 21325 0.69 0.753422
Target:  5'- uCGGGCUUgauGCCgGCCACCGCGccCAGGu -3'
miRNA:   3'- -GCUUGAG---UGG-UGGUGGCGUuuGUUCc -5'
26587 5' -50.4 NC_005357.1 + 33500 0.74 0.472921
Target:  5'- gCGAAUccggCACgGCCACCGCuGGCGAGa -3'
miRNA:   3'- -GCUUGa---GUGgUGGUGGCGuUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 34223 0.74 0.494273
Target:  5'- aCGAACUgGCCGCCAugUCGCuGACGAacGGg -3'
miRNA:   3'- -GCUUGAgUGGUGGU--GGCGuUUGUU--CC- -5'
26587 5' -50.4 NC_005357.1 + 30366 0.72 0.583411
Target:  5'- aGAACcCGCCGCUGCUGUAGGguGGGu -3'
miRNA:   3'- gCUUGaGUGGUGGUGGCGUUUguUCC- -5'
26587 5' -50.4 NC_005357.1 + 17191 0.72 0.606314
Target:  5'- cCGGGCugauuUCGCCGCCGCCGaagGAGCGuugcAGGa -3'
miRNA:   3'- -GCUUG-----AGUGGUGGUGGCg--UUUGU----UCC- -5'
26587 5' -50.4 NC_005357.1 + 21929 0.71 0.67525
Target:  5'- aGAugUCACCGCCgACCaagGCccAACGGGGc -3'
miRNA:   3'- gCUugAGUGGUGG-UGG---CGu-UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 15816 0.7 0.686653
Target:  5'- ---cCUCgGCCACCACCGC--GCAGGa -3'
miRNA:   3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 29112 0.7 0.709275
Target:  5'- gGGACUUGCUGCCGgucaCGCGcGCGAGGc -3'
miRNA:   3'- gCUUGAGUGGUGGUg---GCGUuUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 13929 0.7 0.720469
Target:  5'- gCGAugUCGCgCAgCGCCGUGGACu-GGa -3'
miRNA:   3'- -GCUugAGUG-GUgGUGGCGUUUGuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.