miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26587 5' -50.4 NC_005357.1 + 32226 1.12 0.001526
Target:  5'- cCGAACUCACCACCACCGCAAACAAGGa -3'
miRNA:   3'- -GCUUGAGUGGUGGUGGCGUUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 13098 0.79 0.267902
Target:  5'- aGGACUUggccggcgACCGCCACCGCcuugaagugcuGGGCAAGGg -3'
miRNA:   3'- gCUUGAG--------UGGUGGUGGCG-----------UUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 16431 0.76 0.355929
Target:  5'- uCGAAaUCGCCAauaCGCCGCAGaccgGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCGUU----UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 33500 0.74 0.472921
Target:  5'- gCGAAUccggCACgGCCACCGCuGGCGAGa -3'
miRNA:   3'- -GCUUGa---GUGgUGGUGGCGuUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 22579 0.74 0.483541
Target:  5'- cCGAACUCACCA-CGCUGCuGAACAAa- -3'
miRNA:   3'- -GCUUGAGUGGUgGUGGCG-UUUGUUcc -5'
26587 5' -50.4 NC_005357.1 + 34223 0.74 0.494273
Target:  5'- aCGAACUgGCCGCCAugUCGCuGACGAacGGg -3'
miRNA:   3'- -GCUUGAgUGGUGGU--GGCGuUUGUU--CC- -5'
26587 5' -50.4 NC_005357.1 + 27103 0.74 0.494273
Target:  5'- -cGGCUCACCGCCugCacucaaGAGCGAGGa -3'
miRNA:   3'- gcUUGAGUGGUGGugGcg----UUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 2828 0.73 0.512761
Target:  5'- gGuGCUCGCgGCCACgCGCAgcggcgccagcaccAGCGAGGg -3'
miRNA:   3'- gCuUGAGUGgUGGUG-GCGU--------------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 33801 0.73 0.527089
Target:  5'- gCGAcCUCGCCACCGCaGCGGcCGAGa -3'
miRNA:   3'- -GCUuGAGUGGUGGUGgCGUUuGUUCc -5'
26587 5' -50.4 NC_005357.1 + 28803 0.72 0.572022
Target:  5'- cCGGACUUgcuGCCGCUACCGaugcugucGGCAAGGu -3'
miRNA:   3'- -GCUUGAG---UGGUGGUGGCgu------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 30366 0.72 0.583411
Target:  5'- aGAACcCGCCGCUGCUGUAGGguGGGu -3'
miRNA:   3'- gCUUGaGUGGUGGUGGCGUUUguUCC- -5'
26587 5' -50.4 NC_005357.1 + 17191 0.72 0.606314
Target:  5'- cCGGGCugauuUCGCCGCCGCCGaagGAGCGuugcAGGa -3'
miRNA:   3'- -GCUUG-----AGUGGUGGUGGCg--UUUGU----UCC- -5'
26587 5' -50.4 NC_005357.1 + 32867 0.71 0.628162
Target:  5'- cCGGauGCUCGCCACCGgcgagcagaUCGCAcuggccgAACAGGGc -3'
miRNA:   3'- -GCU--UGAGUGGUGGU---------GGCGU-------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 6572 0.71 0.640822
Target:  5'- aGGGCUUGCCAuCCGCCuCGGcCAGGGg -3'
miRNA:   3'- gCUUGAGUGGU-GGUGGcGUUuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 41277 0.71 0.652322
Target:  5'- gGGGCgUgACCGCCGCCGUAGcGCGAGc -3'
miRNA:   3'- gCUUG-AgUGGUGGUGGCGUU-UGUUCc -5'
26587 5' -50.4 NC_005357.1 + 17872 0.71 0.663802
Target:  5'- cCGGcCUCGCCAUCGCCGCGcugcGCGAc- -3'
miRNA:   3'- -GCUuGAGUGGUGGUGGCGUu---UGUUcc -5'
26587 5' -50.4 NC_005357.1 + 5359 0.71 0.663802
Target:  5'- gCGuGGC-CGCCugCACCGCGccCAGGGu -3'
miRNA:   3'- -GC-UUGaGUGGugGUGGCGUuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 21929 0.71 0.67525
Target:  5'- aGAugUCACCGCCgACCaagGCccAACGGGGc -3'
miRNA:   3'- gCUugAGUGGUGG-UGG---CGu-UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 15816 0.7 0.686653
Target:  5'- ---cCUCgGCCACCACCGC--GCAGGa -3'
miRNA:   3'- gcuuGAG-UGGUGGUGGCGuuUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 6421 0.7 0.707027
Target:  5'- uCGAACUCguccucgcucgcgacACCACCGcCCGCGAaggcgucgccgucgcGCAGGa -3'
miRNA:   3'- -GCUUGAG---------------UGGUGGU-GGCGUU---------------UGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.