miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26588 3' -56 NC_005357.1 + 40421 0.66 0.581781
Target:  5'- --uCGCCAGCGa---GCGCcugGGCCUCAa -3'
miRNA:   3'- uuuGUGGUCGCgcaaCGCG---CUGGAGU- -5'
26588 3' -56 NC_005357.1 + 12991 0.66 0.570579
Target:  5'- gGAGCACCugGGCGCGacGUGCGAgCg-- -3'
miRNA:   3'- -UUUGUGG--UCGCGCaaCGCGCUgGagu -5'
26588 3' -56 NC_005357.1 + 30293 0.66 0.570579
Target:  5'- gAAGCG-CAGCGCGUgGCGCGucgcGCCa-- -3'
miRNA:   3'- -UUUGUgGUCGCGCAaCGCGC----UGGagu -5'
26588 3' -56 NC_005357.1 + 22694 0.66 0.570579
Target:  5'- cGGCaACCAGCccaagcaggGCGaUGCGCGgcGCCUCu -3'
miRNA:   3'- uUUG-UGGUCG---------CGCaACGCGC--UGGAGu -5'
26588 3' -56 NC_005357.1 + 12521 0.66 0.559429
Target:  5'- -----aCAGCGCGUcgaggugcUGCuCGACCUCGg -3'
miRNA:   3'- uuugugGUCGCGCA--------ACGcGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 28747 0.66 0.559429
Target:  5'- uGGCAucguCCAGCGCGgUGCGCu-UCUCGg -3'
miRNA:   3'- uUUGU----GGUCGCGCaACGCGcuGGAGU- -5'
26588 3' -56 NC_005357.1 + 2231 0.66 0.559429
Target:  5'- -cACGCgCAGCagGCGgcGCGUGGCCgcgCAa -3'
miRNA:   3'- uuUGUG-GUCG--CGCaaCGCGCUGGa--GU- -5'
26588 3' -56 NC_005357.1 + 23849 0.66 0.559429
Target:  5'- cGGACgGCCAGgccgucacCGCGa-GCGCGGCCUCc -3'
miRNA:   3'- -UUUG-UGGUC--------GCGCaaCGCGCUGGAGu -5'
26588 3' -56 NC_005357.1 + 29462 0.66 0.548341
Target:  5'- uGGCACCAG-GCGacgaagcGCGCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCgCGCaa-----CGCGCUGGagu -5'
26588 3' -56 NC_005357.1 + 14636 0.66 0.548341
Target:  5'- -uGCugCGGCuGCGcgGCGCGcGCUUCGu -3'
miRNA:   3'- uuUGugGUCG-CGCaaCGCGC-UGGAGU- -5'
26588 3' -56 NC_005357.1 + 12383 0.66 0.541721
Target:  5'- cGGCACCAGUGCGaauacguggUguggggcaccaaggGCGCGGCCgugCAg -3'
miRNA:   3'- uUUGUGGUCGCGC---------Aa-------------CGCGCUGGa--GU- -5'
26588 3' -56 NC_005357.1 + 31508 0.66 0.526383
Target:  5'- --cCGCCGGCGUGcUGCuG-GGCCUCGc -3'
miRNA:   3'- uuuGUGGUCGCGCaACG-CgCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 14718 0.66 0.526383
Target:  5'- cAugACCGGCGgcgagccgcugcCGgcGCGCGGCCUg- -3'
miRNA:   3'- uUugUGGUCGC------------GCaaCGCGCUGGAgu -5'
26588 3' -56 NC_005357.1 + 34812 0.66 0.526383
Target:  5'- -cACGuguCCGGCGC--UGCGCGACCa-- -3'
miRNA:   3'- uuUGU---GGUCGCGcaACGCGCUGGagu -5'
26588 3' -56 NC_005357.1 + 13080 0.67 0.519859
Target:  5'- --cCACCGGCGCGUgguucgaggacuugGCcgGCGACCg-- -3'
miRNA:   3'- uuuGUGGUCGCGCAa-------------CG--CGCUGGagu -5'
26588 3' -56 NC_005357.1 + 10326 0.67 0.515527
Target:  5'- cAGCgGCCAGgGCGUUGagcaaCGCGGCCg-- -3'
miRNA:   3'- uUUG-UGGUCgCGCAAC-----GCGCUGGagu -5'
26588 3' -56 NC_005357.1 + 26363 0.67 0.515527
Target:  5'- cGGCGCCGcGCGCGgcggccacgUGCGCGaacugGCCUaCAa -3'
miRNA:   3'- uUUGUGGU-CGCGCa--------ACGCGC-----UGGA-GU- -5'
26588 3' -56 NC_005357.1 + 35761 0.67 0.515527
Target:  5'- uGAACAUCGGCGUG--GCGCaGACCa-- -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGCG-CUGGagu -5'
26588 3' -56 NC_005357.1 + 29244 0.67 0.515527
Target:  5'- cAACGCCGGCcaaggGCGcccaGCGCGGCCg-- -3'
miRNA:   3'- uUUGUGGUCG-----CGCaa--CGCGCUGGagu -5'
26588 3' -56 NC_005357.1 + 9353 0.67 0.504763
Target:  5'- ---gGCCGcCGCGUcgcUGCGCGACC-CGa -3'
miRNA:   3'- uuugUGGUcGCGCA---ACGCGCUGGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.