miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26588 5' -58.6 NC_005357.1 + 32322 1.08 0.00038
Target:  5'- cAUCAAGGCCGGCGUCCCGACAACCGCc -3'
miRNA:   3'- -UAGUUCCGGCCGCAGGGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 24821 0.76 0.098621
Target:  5'- cAUCGAGGCCGGUa--UCGACAACgCGCa -3'
miRNA:   3'- -UAGUUCCGGCCGcagGGCUGUUG-GCG- -5'
26588 5' -58.6 NC_005357.1 + 1706 0.75 0.120108
Target:  5'- uUCGccguGGGCCGGCGUgCCGGCGAggGCg -3'
miRNA:   3'- uAGU----UCCGGCCGCAgGGCUGUUggCG- -5'
26588 5' -58.6 NC_005357.1 + 33790 0.75 0.123513
Target:  5'- gAUgAAGGCCGGCGaCCUcGCcACCGCa -3'
miRNA:   3'- -UAgUUCCGGCCGCaGGGcUGuUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 27416 0.74 0.145885
Target:  5'- cGUCGcGcGCCuGGCGcaccgcgCCCGGCGGCCGCa -3'
miRNA:   3'- -UAGUuC-CGG-CCGCa------GGGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 15397 0.73 0.171896
Target:  5'- ---cGGGCCGGCGaagaugCCgGACGACCGa -3'
miRNA:   3'- uaguUCCGGCCGCa-----GGgCUGUUGGCg -5'
26588 5' -58.6 NC_005357.1 + 41694 0.72 0.181449
Target:  5'- -aCcuGGCCGGCGUUgUCGGCAaaGCCGCc -3'
miRNA:   3'- uaGuuCCGGCCGCAG-GGCUGU--UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 31154 0.72 0.186399
Target:  5'- -aCcuGGCCGaGCGUCCCaGC-GCCGCa -3'
miRNA:   3'- uaGuuCCGGC-CGCAGGGcUGuUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 35176 0.72 0.196658
Target:  5'- -aCAAGGCCGGCGacaUCGGC--CCGCg -3'
miRNA:   3'- uaGUUCCGGCCGCag-GGCUGuuGGCG- -5'
26588 5' -58.6 NC_005357.1 + 8522 0.72 0.201433
Target:  5'- ---uGGGCCguGGCGUaggcgaugaaacgCUCGACAGCCGCg -3'
miRNA:   3'- uaguUCCGG--CCGCA-------------GGGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 16172 0.72 0.20197
Target:  5'- -aCcAGGCCGGCGggugCCCGugccuucgGCGACgCGCg -3'
miRNA:   3'- uaGuUCCGGCCGCa---GGGC--------UGUUG-GCG- -5'
26588 5' -58.6 NC_005357.1 + 29352 0.72 0.205217
Target:  5'- cGUgGAGGCCGaGCG-CCaauucaacaugcaGACGGCCGCa -3'
miRNA:   3'- -UAgUUCCGGC-CGCaGGg------------CUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 15735 0.71 0.230429
Target:  5'- -gCGAGGCCauGCG-CUCGACAuACCGCa -3'
miRNA:   3'- uaGUUCCGGc-CGCaGGGCUGU-UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 272 0.71 0.236512
Target:  5'- cUUGAGGCaCGGCGUCCag-UAGCUGCg -3'
miRNA:   3'- uAGUUCCG-GCCGCAGGgcuGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 12344 0.7 0.25557
Target:  5'- --aAGGGCCguGGCG-CCCGGgcGCCGCa -3'
miRNA:   3'- uagUUCCGG--CCGCaGGGCUguUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 40476 0.7 0.25557
Target:  5'- -cCAGGGCCGcGCG-CUCGACcagaacCCGCa -3'
miRNA:   3'- uaGUUCCGGC-CGCaGGGCUGuu----GGCG- -5'
26588 5' -58.6 NC_005357.1 + 35764 0.7 0.262197
Target:  5'- cUCAAGGCCaacuacgacGGCuucCCCGGCAACCuGUa -3'
miRNA:   3'- uAGUUCCGG---------CCGca-GGGCUGUUGG-CG- -5'
26588 5' -58.6 NC_005357.1 + 40182 0.69 0.282917
Target:  5'- cGUCGAacuGCCGGCcaaggCCCGGCGuuuauACCGCg -3'
miRNA:   3'- -UAGUUc--CGGCCGca---GGGCUGU-----UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 10066 0.69 0.290106
Target:  5'- ----cGGCCGGgGcCUCGGCGgcgACCGCa -3'
miRNA:   3'- uaguuCCGGCCgCaGGGCUGU---UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 37342 0.69 0.290106
Target:  5'- ---uGGGCCGGcCG-CCUGuucCAACCGCa -3'
miRNA:   3'- uaguUCCGGCC-GCaGGGCu--GUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.