Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26588 | 5' | -58.6 | NC_005357.1 | + | 25677 | 0.66 | 0.443656 |
Target: 5'- cGUCAucaGCCGGCGgaUUUCGGCAacGCUGCu -3' miRNA: 3'- -UAGUuc-CGGCCGC--AGGGCUGU--UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 28210 | 0.69 | 0.31253 |
Target: 5'- uGUCcAGGUCGGCcaCgCCGACGACCacGCg -3' miRNA: 3'- -UAGuUCCGGCCGcaG-GGCUGUUGG--CG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 31904 | 0.69 | 0.320291 |
Target: 5'- cAUCGAGGCCgagugccugcGGCGUUUCGAgGcCUGCu -3' miRNA: 3'- -UAGUUCCGG----------CCGCAGGGCUgUuGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 36667 | 0.68 | 0.328196 |
Target: 5'- gGUCAAGGCCcuGGCGcacucgcugCCCGGCG--CGCu -3' miRNA: 3'- -UAGUUCCGG--CCGCa--------GGGCUGUugGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 13308 | 0.68 | 0.331398 |
Target: 5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3' miRNA: 3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 10001 | 0.68 | 0.36986 |
Target: 5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3' miRNA: 3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 24501 | 0.67 | 0.382157 |
Target: 5'- aGUCGuagGGGCUGGCGcccacgccgaucacgUCCaggugGAUGACCGCg -3' miRNA: 3'- -UAGU---UCCGGCCGC---------------AGGg----CUGUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 14536 | 0.67 | 0.387509 |
Target: 5'- -aCGucGCCGGCG-CCgGACAACaGCg -3' miRNA: 3'- uaGUucCGGCCGCaGGgCUGUUGgCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 8034 | 0.67 | 0.396539 |
Target: 5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3' miRNA: 3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 22803 | 0.69 | 0.31253 |
Target: 5'- gGUCAgcauGGuGCCGGacuggCCCGACuucGCCGCg -3' miRNA: 3'- -UAGU----UC-CGGCCgca--GGGCUGu--UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 38037 | 0.69 | 0.304912 |
Target: 5'- cUCAAGGcCCGGCGcgacggcgCCUGGCugcgcauCCGCc -3' miRNA: 3'- uAGUUCC-GGCCGCa-------GGGCUGuu-----GGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 37342 | 0.69 | 0.290106 |
Target: 5'- ---uGGGCCGGcCG-CCUGuucCAACCGCa -3' miRNA: 3'- uaguUCCGGCC-GCaGGGCu--GUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 1706 | 0.75 | 0.120108 |
Target: 5'- uUCGccguGGGCCGGCGUgCCGGCGAggGCg -3' miRNA: 3'- uAGU----UCCGGCCGCAgGGCUGUUggCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 27416 | 0.74 | 0.145885 |
Target: 5'- cGUCGcGcGCCuGGCGcaccgcgCCCGGCGGCCGCa -3' miRNA: 3'- -UAGUuC-CGG-CCGCa------GGGCUGUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 15397 | 0.73 | 0.171896 |
Target: 5'- ---cGGGCCGGCGaagaugCCgGACGACCGa -3' miRNA: 3'- uaguUCCGGCCGCa-----GGgCUGUUGGCg -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 35176 | 0.72 | 0.196658 |
Target: 5'- -aCAAGGCCGGCGacaUCGGC--CCGCg -3' miRNA: 3'- uaGUUCCGGCCGCag-GGCUGuuGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 15735 | 0.71 | 0.230429 |
Target: 5'- -gCGAGGCCauGCG-CUCGACAuACCGCa -3' miRNA: 3'- uaGUUCCGGc-CGCaGGGCUGU-UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 40476 | 0.7 | 0.25557 |
Target: 5'- -cCAGGGCCGcGCG-CUCGACcagaacCCGCa -3' miRNA: 3'- uaGUUCCGGC-CGCaGGGCUGuu----GGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 35764 | 0.7 | 0.262197 |
Target: 5'- cUCAAGGCCaacuacgacGGCuucCCCGGCAACCuGUa -3' miRNA: 3'- uAGUUCCGG---------CCGca-GGGCUGUUGG-CG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 40182 | 0.69 | 0.282917 |
Target: 5'- cGUCGAacuGCCGGCcaaggCCCGGCGuuuauACCGCg -3' miRNA: 3'- -UAGUUc--CGGCCGca---GGGCUGU-----UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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