Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26588 | 5' | -58.6 | NC_005357.1 | + | 272 | 0.71 | 0.236512 |
Target: 5'- cUUGAGGCaCGGCGUCCag-UAGCUGCg -3' miRNA: 3'- uAGUUCCG-GCCGCAGGgcuGUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 733 | 0.67 | 0.378616 |
Target: 5'- aGUCGAGcGCCuGGCGgaugaCCGACAcguaguuguucACCGUc -3' miRNA: 3'- -UAGUUC-CGG-CCGCag---GGCUGU-----------UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 1350 | 0.66 | 0.483524 |
Target: 5'- -cCGuGGUCGGCGgccuugcgcaUCCGGCGACCGa -3' miRNA: 3'- uaGUuCCGGCCGCa---------GGGCUGUUGGCg -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 1464 | 0.66 | 0.453452 |
Target: 5'- -gCGcGGUCGGCGgccUCCUGGCAgGCCGg -3' miRNA: 3'- uaGUuCCGGCCGC---AGGGCUGU-UGGCg -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 1706 | 0.75 | 0.120108 |
Target: 5'- uUCGccguGGGCCGGCGUgCCGGCGAggGCg -3' miRNA: 3'- uAGU----UCCGGCCGCAgGGCUGUUggCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 1757 | 0.67 | 0.387509 |
Target: 5'- gGUCAuGGCCGGCcugcgCCUGGCGcgucggGCCGa -3' miRNA: 3'- -UAGUuCCGGCCGca---GGGCUGU------UGGCg -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 4255 | 0.66 | 0.473391 |
Target: 5'- aGUCGGuGCCGGcCGUCagcgCCGGCAuggugaugGCCGUg -3' miRNA: 3'- -UAGUUcCGGCC-GCAG----GGCUGU--------UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 4823 | 0.68 | 0.331398 |
Target: 5'- gGUCGGGGCCGGCGcCgUCGucgaauucacggaaaGCGGCCaGCu -3' miRNA: 3'- -UAGUUCCGGCCGCaG-GGC---------------UGUUGG-CG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 5575 | 0.66 | 0.453452 |
Target: 5'- uGUCGAGGCCGGCauacUCCaCGAauuuGGCC-Ca -3' miRNA: 3'- -UAGUUCCGGCCGc---AGG-GCUg---UUGGcG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 6385 | 0.66 | 0.443656 |
Target: 5'- aAUCAggcgcAGGCCGGCcggCCCGGugUAGUCGCg -3' miRNA: 3'- -UAGU-----UCCGGCCGca-GGGCU--GUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 7701 | 0.69 | 0.304912 |
Target: 5'- cUCGGcGGCCGGCuUgCCGAUgAACUGCa -3' miRNA: 3'- uAGUU-CCGGCCGcAgGGCUG-UUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 8034 | 0.67 | 0.396539 |
Target: 5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3' miRNA: 3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 8522 | 0.72 | 0.201433 |
Target: 5'- ---uGGGCCguGGCGUaggcgaugaaacgCUCGACAGCCGCg -3' miRNA: 3'- uaguUCCGG--CCGCA-------------GGGCUGUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 10001 | 0.68 | 0.36986 |
Target: 5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3' miRNA: 3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 10066 | 0.69 | 0.290106 |
Target: 5'- ----cGGCCGGgGcCUCGGCGgcgACCGCa -3' miRNA: 3'- uaguuCCGGCCgCaGGGCUGU---UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 11418 | 0.67 | 0.405704 |
Target: 5'- ----cGGCCGGCaagCCCGugGACagguCGCg -3' miRNA: 3'- uaguuCCGGCCGca-GGGCugUUG----GCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 12344 | 0.7 | 0.25557 |
Target: 5'- --aAGGGCCguGGCG-CCCGGgcGCCGCa -3' miRNA: 3'- uagUUCCGG--CCGCaGGGCUguUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 12803 | 0.67 | 0.391105 |
Target: 5'- cAUCAAGcCCGGCcacaagcgCCCGGCGcuggacaacuggcaaACCGCg -3' miRNA: 3'- -UAGUUCcGGCCGca------GGGCUGU---------------UGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 13074 | 0.68 | 0.356142 |
Target: 5'- -gCAAGGCCaccGGCGcgUgguucgaggacuuggCCGGCGACCGCc -3' miRNA: 3'- uaGUUCCGG---CCGCa-G---------------GGCUGUUGGCG- -5' |
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26588 | 5' | -58.6 | NC_005357.1 | + | 13308 | 0.68 | 0.331398 |
Target: 5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3' miRNA: 3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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