miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 3' -53.2 NC_005357.1 + 27582 0.65 0.748389
Target:  5'- gGGCACCGgcAGcAGGCgGCGCcagauggcguggucGUCGCc -3'
miRNA:   3'- -UCGUGGCuuUUuUUCGgCGCG--------------CGGUG- -5'
26589 3' -53.2 NC_005357.1 + 10129 0.66 0.696097
Target:  5'- uGGCGgCGAu--GAGGUCGCGCaaCGCg -3'
miRNA:   3'- -UCGUgGCUuuuUUUCGGCGCGcgGUG- -5'
26589 3' -53.2 NC_005357.1 + 28101 0.66 0.740749
Target:  5'- aGGC-CCGgcAGuucagccAAGgCGCGCGCCAg -3'
miRNA:   3'- -UCGuGGCuuUUu------UUCgGCGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 15096 0.66 0.739653
Target:  5'- uGCugCGA-------CCGCGCGCCGu -3'
miRNA:   3'- uCGugGCUuuuuuucGGCGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 23712 0.66 0.729734
Target:  5'- uAGCGCCc-----AGGUCGCGgGCCAg -3'
miRNA:   3'- -UCGUGGcuuuuuUUCGGCGCgCGGUg -5'
26589 3' -53.2 NC_005357.1 + 1692 0.66 0.696097
Target:  5'- aGGUAgUCGAGAAAuucGCCGUGgGCCGg -3'
miRNA:   3'- -UCGU-GGCUUUUUuu-CGGCGCgCGGUg -5'
26589 3' -53.2 NC_005357.1 + 18415 0.66 0.696097
Target:  5'- -uCGCUGAAuu--GGCCGaCGCGCCcACc -3'
miRNA:   3'- ucGUGGCUUuuuuUCGGC-GCGCGG-UG- -5'
26589 3' -53.2 NC_005357.1 + 18515 0.66 0.696097
Target:  5'- cGCcuauGCCGGcauGGAAGCCGCggGCGUgGCg -3'
miRNA:   3'- uCG----UGGCUuu-UUUUCGGCG--CGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 24031 0.66 0.696097
Target:  5'- -uCGCCGAcgu--GGCCGCcaccgGCGCCAUc -3'
miRNA:   3'- ucGUGGCUuuuuuUCGGCG-----CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 12109 0.66 0.740749
Target:  5'- gAGCACgguuucaauCGGcAGGuuGGCgCGaCGCGCCACg -3'
miRNA:   3'- -UCGUG---------GCU-UUUuuUCG-GC-GCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 40465 0.66 0.740749
Target:  5'- cGUGCCuucccccAGGGCCGCGCGCUc- -3'
miRNA:   3'- uCGUGGcuuuu--UUUCGGCGCGCGGug -5'
26589 3' -53.2 NC_005357.1 + 37330 0.66 0.696097
Target:  5'- cGCACCGGAcgcuGGGCCG-GcCGCCu- -3'
miRNA:   3'- uCGUGGCUUuuu-UUCGGCgC-GCGGug -5'
26589 3' -53.2 NC_005357.1 + 25381 0.66 0.718611
Target:  5'- aGGCGCCaGAAgcccuuuugcGAGuuguAGCCGUccGUGCCGCc -3'
miRNA:   3'- -UCGUGG-CUU----------UUUu---UCGGCG--CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 4142 0.66 0.707394
Target:  5'- cGGCGCauaguGGAAGCCGCccaccuugcGCGCCGu -3'
miRNA:   3'- -UCGUGgcuuuUUUUCGGCG---------CGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 9186 0.66 0.714135
Target:  5'- uGGCGCCGucgacguuGGCCugcucggcgGCGCGgCGCa -3'
miRNA:   3'- -UCGUGGCuuuuuu--UCGG---------CGCGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 35037 0.66 0.729734
Target:  5'- aAGCuGgUGGAAGGucGCCGCGgugccCGCCGCu -3'
miRNA:   3'- -UCG-UgGCUUUUUuuCGGCGC-----GCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 2504 0.66 0.729734
Target:  5'- gAGCGCCGAGAuuAGGCgGgGCuUCGg -3'
miRNA:   3'- -UCGUGGCUUUuuUUCGgCgCGcGGUg -5'
26589 3' -53.2 NC_005357.1 + 9700 0.66 0.718611
Target:  5'- gGGCGCCuugcccucGAAGAgauacgccucGAAGCCGCGgGCgAa -3'
miRNA:   3'- -UCGUGG--------CUUUU----------UUUCGGCGCgCGgUg -5'
26589 3' -53.2 NC_005357.1 + 37926 0.66 0.718611
Target:  5'- aAGCGCCugu--GgcGCCGCGCGCa-- -3'
miRNA:   3'- -UCGUGGcuuuuUuuCGGCGCGCGgug -5'
26589 3' -53.2 NC_005357.1 + 37281 0.66 0.718611
Target:  5'- gAGCAgCGAc----GGCCGCcuGCGCgGCa -3'
miRNA:   3'- -UCGUgGCUuuuuuUCGGCG--CGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.