miRNA display CGI


Results 1 - 20 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 3' -53.2 NC_005357.1 + 16061 0.71 0.400364
Target:  5'- cGCGCaCGu--GGccGCCGCGCGCgGCg -3'
miRNA:   3'- uCGUG-GCuuuUUuuCGGCGCGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 16943 0.73 0.320121
Target:  5'- cGGCGCCGucc---AGCaGCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuuuUCGgCGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 19876 0.73 0.320121
Target:  5'- cGUGCCGAAGGc--GUCGCGCGCCu- -3'
miRNA:   3'- uCGUGGCUUUUuuuCGGCGCGCGGug -5'
26589 3' -53.2 NC_005357.1 + 23763 0.73 0.345471
Target:  5'- cGGCGCCacc---GGGCCGaUGCGCCGCg -3'
miRNA:   3'- -UCGUGGcuuuuuUUCGGC-GCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 36214 0.72 0.354235
Target:  5'- aAGaccaCGAccAGGAGCCGCGCGCCGu -3'
miRNA:   3'- -UCgug-GCUuuUUUUCGGCGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 27785 0.72 0.354235
Target:  5'- cGUACaCGAAGcgcgcGCCGCGCaGCCGCa -3'
miRNA:   3'- uCGUG-GCUUUuuuu-CGGCGCG-CGGUG- -5'
26589 3' -53.2 NC_005357.1 + 13289 0.72 0.363155
Target:  5'- cAGCGCCGAuu----GCaGCGCGCCGg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGgCGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 24425 0.72 0.366767
Target:  5'- cGGC-CCGAuuugucgguGCCGCGCGCgGCc -3'
miRNA:   3'- -UCGuGGCUuuuuuu---CGGCGCGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 32869 0.72 0.37223
Target:  5'- cGGCGCCGAGAuu--GUCGCGC-CCGa -3'
miRNA:   3'- -UCGUGGCUUUuuuuCGGCGCGcGGUg -5'
26589 3' -53.2 NC_005357.1 + 27680 0.73 0.311987
Target:  5'- -cCACCGuggucuuGGAAuacAGGCCGCGCGCCGg -3'
miRNA:   3'- ucGUGGCu------UUUU---UUCGGCGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 26336 0.74 0.30401
Target:  5'- cGCACCGcGAAcuGGCCGCGcCGCUc- -3'
miRNA:   3'- uCGUGGCuUUUuuUCGGCGC-GCGGug -5'
26589 3' -53.2 NC_005357.1 + 9995 0.74 0.288529
Target:  5'- uGGCGgggUCGAAAGu--GCCGCGCGCC-Cg -3'
miRNA:   3'- -UCGU---GGCUUUUuuuCGGCGCGCGGuG- -5'
26589 3' -53.2 NC_005357.1 + 20748 0.78 0.171206
Target:  5'- uGGCGCCGu---AGAGgCGCuGCGCCGCg -3'
miRNA:   3'- -UCGUGGCuuuuUUUCgGCG-CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 17263 0.77 0.175642
Target:  5'- cGGCaaGCCGggGAuauugccguccacGAAGCCG-GCGCCGCg -3'
miRNA:   3'- -UCG--UGGCuuUU-------------UUUCGGCgCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 3869 0.77 0.181203
Target:  5'- aGGCGCCGucgcuguAGGCCGCGCuGCCGu -3'
miRNA:   3'- -UCGUGGCuuuuu--UUCGGCGCG-CGGUg -5'
26589 3' -53.2 NC_005357.1 + 27457 0.77 0.186393
Target:  5'- uGGCGCUGGuau---GCCaGCGCGCCGCg -3'
miRNA:   3'- -UCGUGGCUuuuuuuCGG-CGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 32609 0.77 0.197166
Target:  5'- uGGC-CCGcgucAAGGGCCGCGaCGCCGCg -3'
miRNA:   3'- -UCGuGGCuuu-UUUUCGGCGC-GCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 35078 0.76 0.220348
Target:  5'- cGaCGCCGAGGucGAGGCCGCGCucaagGCCAUg -3'
miRNA:   3'- uC-GUGGCUUUu-UUUCGGCGCG-----CGGUG- -5'
26589 3' -53.2 NC_005357.1 + 36133 0.75 0.239228
Target:  5'- cGCACCGGAGAuAAGCCccgGCGCcccaGCCAa -3'
miRNA:   3'- uCGUGGCUUUUuUUCGG---CGCG----CGGUg -5'
26589 3' -53.2 NC_005357.1 + 18445 0.75 0.245815
Target:  5'- uGCACCGAAAacguGAcGGUCGCGgCGCCGg -3'
miRNA:   3'- uCGUGGCUUU----UUuUCGGCGC-GCGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.