miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 3' -53.2 NC_005357.1 + 191 0.7 0.477344
Target:  5'- gGGCACCGucacgcuGCCGgGCGaCACg -3'
miRNA:   3'- -UCGUGGCuuuuuuuCGGCgCGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 295 0.66 0.740749
Target:  5'- uGCGCCGGAAGGcgcGCUcuuccguccaggGCGUGCCGu -3'
miRNA:   3'- uCGUGGCUUUUUuu-CGG------------CGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 379 0.72 0.390836
Target:  5'- uGGCcuGCCGAuuGAGcgcGGCCaGCGCGCgACu -3'
miRNA:   3'- -UCG--UGGCUuuUUU---UCGG-CGCGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 1692 0.66 0.696097
Target:  5'- aGGUAgUCGAGAAAuucGCCGUGgGCCGg -3'
miRNA:   3'- -UCGU-GGCUUUUUuu-CGGCGCgCGGUg -5'
26589 3' -53.2 NC_005357.1 + 1969 0.68 0.570022
Target:  5'- cGGCcCUGggGGAAGGCaCGCuGUagGCCGCg -3'
miRNA:   3'- -UCGuGGCuuUUUUUCG-GCG-CG--CGGUG- -5'
26589 3' -53.2 NC_005357.1 + 2443 0.67 0.673313
Target:  5'- aGGCGCCGAAAcugcGGCCcagGCGCuCGCc -3'
miRNA:   3'- -UCGUGGCUUUuuu-UCGGcg-CGCG-GUG- -5'
26589 3' -53.2 NC_005357.1 + 2504 0.66 0.729734
Target:  5'- gAGCGCCGAGAuuAGGCgGgGCuUCGg -3'
miRNA:   3'- -UCGUGGCUUUuuUUCGgCgCGcGGUg -5'
26589 3' -53.2 NC_005357.1 + 2897 0.68 0.592846
Target:  5'- gGGCACaGAc-----GCCGCGCGCCcCg -3'
miRNA:   3'- -UCGUGgCUuuuuuuCGGCGCGCGGuG- -5'
26589 3' -53.2 NC_005357.1 + 3869 0.77 0.181203
Target:  5'- aGGCGCCGucgcuguAGGCCGCGCuGCCGu -3'
miRNA:   3'- -UCGUGGCuuuuu--UUCGGCGCG-CGGUg -5'
26589 3' -53.2 NC_005357.1 + 4142 0.66 0.707394
Target:  5'- cGGCGCauaguGGAAGCCGCccaccuugcGCGCCGu -3'
miRNA:   3'- -UCGUGgcuuuUUUUCGGCG---------CGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 4196 0.71 0.450147
Target:  5'- gGGCGCCGAAAAGuuggaaucGGCgCGCaccGUGCCAUc -3'
miRNA:   3'- -UCGUGGCUUUUUu-------UCG-GCG---CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 4391 0.67 0.638846
Target:  5'- aGGCGCCGucgcgccGGGCCuugaGCGUGCgGCa -3'
miRNA:   3'- -UCGUGGCuuuuu--UUCGG----CGCGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 4434 0.68 0.592846
Target:  5'- cGCGCCaGGGGGAAGCCGCcagcgGUGgCACc -3'
miRNA:   3'- uCGUGGcUUUUUUUCGGCG-----CGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 4496 0.68 0.604317
Target:  5'- -cCGCCGGAu----GCgCGCgGCGCCACa -3'
miRNA:   3'- ucGUGGCUUuuuuuCG-GCG-CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 5125 0.71 0.419858
Target:  5'- uGGCGCCGuuGAAcuGCaaCGUGCCGCg -3'
miRNA:   3'- -UCGUGGCuuUUUuuCGgcGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 5370 0.69 0.514081
Target:  5'- uGCACCGcgcccAGGGUuaugucacuggUGCGCGCCGCg -3'
miRNA:   3'- uCGUGGCuuuu-UUUCG-----------GCGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 5753 0.68 0.581411
Target:  5'- cGCGCCGGGc---AGCgaGUGCGCCAg -3'
miRNA:   3'- uCGUGGCUUuuuuUCGg-CGCGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 5807 0.67 0.650357
Target:  5'- cAGCGCCagcGGAuAGucGGGCaugGCGUGCCGCa -3'
miRNA:   3'- -UCGUGG---CUUuUU--UUCGg--CGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 6371 0.66 0.740749
Target:  5'- gGGCGCUGGguuacaccAGGucGGCCGCcGCGgCGCc -3'
miRNA:   3'- -UCGUGGCU--------UUUuuUCGGCG-CGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 8321 0.66 0.707394
Target:  5'- cGCGCUGcucGGGGAAAGuuGCGCGUg-- -3'
miRNA:   3'- uCGUGGC---UUUUUUUCggCGCGCGgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.