miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 5' -60.8 NC_005357.1 + 32437 1.11 0.000173
Target:  5'- aCGACGGCAGCGACUGCCCCUACGCCCc -3'
miRNA:   3'- -GCUGCCGUCGCUGACGGGGAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 29090 0.78 0.056199
Target:  5'- gCGAcuuCGGCGGCGAcCUGCCgaaagCCUACGCCg -3'
miRNA:   3'- -GCU---GCCGUCGCU-GACGG-----GGAUGCGGg -5'
26589 5' -60.8 NC_005357.1 + 32351 0.76 0.076666
Target:  5'- gGAUGGCA-CGGCUcGCCCCgacgACGCCUc -3'
miRNA:   3'- gCUGCCGUcGCUGA-CGGGGa---UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 37275 0.75 0.098553
Target:  5'- gGGCGugaGCAGCGACgGCCgCCUGCGCg- -3'
miRNA:   3'- gCUGC---CGUCGCUGaCGG-GGAUGCGgg -5'
26589 5' -60.8 NC_005357.1 + 38552 0.74 0.10708
Target:  5'- gCGACGGCAGCG-CgGCCUacagcgacgGCGCCUg -3'
miRNA:   3'- -GCUGCCGUCGCuGaCGGGga-------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 18297 0.74 0.10708
Target:  5'- aGGCGcGCAGcCGGCUGgacuacgaCCCCUACGCgCg -3'
miRNA:   3'- gCUGC-CGUC-GCUGAC--------GGGGAUGCGgG- -5'
26589 5' -60.8 NC_005357.1 + 13497 0.73 0.129738
Target:  5'- uCGAUGGCAGCGGCgagGCCCUg--GCUUu -3'
miRNA:   3'- -GCUGCCGUCGCUGa--CGGGGaugCGGG- -5'
26589 5' -60.8 NC_005357.1 + 248 0.72 0.144602
Target:  5'- cCGGCGGUAGCGAau-CCCCagGCGCUUg -3'
miRNA:   3'- -GCUGCCGUCGCUgacGGGGa-UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 37896 0.72 0.144602
Target:  5'- gCGGCGGCA-CGACcGCCCagcACGCCa -3'
miRNA:   3'- -GCUGCCGUcGCUGaCGGGga-UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 26415 0.72 0.152603
Target:  5'- -aACGGUuucgucaccGGCGAcCUGUCCCUGCGCgCg -3'
miRNA:   3'- gcUGCCG---------UCGCU-GACGGGGAUGCGgG- -5'
26589 5' -60.8 NC_005357.1 + 14818 0.71 0.17439
Target:  5'- --uCGGCGGCG-CUGCCUu--CGCCCa -3'
miRNA:   3'- gcuGCCGUCGCuGACGGGgauGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 8671 0.71 0.17439
Target:  5'- --gUGuGCAGCGGCUGCUgCgcCGCCCa -3'
miRNA:   3'- gcuGC-CGUCGCUGACGGgGauGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 13530 0.71 0.183856
Target:  5'- aCGAgUGGuCGGCGACgGCCagcaaCUACGCCa -3'
miRNA:   3'- -GCU-GCC-GUCGCUGaCGGg----GAUGCGGg -5'
26589 5' -60.8 NC_005357.1 + 41316 0.7 0.198905
Target:  5'- uCGACGGCaAGCcuUUGCCgCCUACcGCCg -3'
miRNA:   3'- -GCUGCCG-UCGcuGACGG-GGAUG-CGGg -5'
26589 5' -60.8 NC_005357.1 + 40041 0.7 0.209524
Target:  5'- ---aGGCAGCGACcGCCaugCCgUGCGCCUc -3'
miRNA:   3'- gcugCCGUCGCUGaCGG---GG-AUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 36021 0.7 0.215016
Target:  5'- aCGACaugGGCcGCGACUacaccgggccgGCCggCCUGCGCCUg -3'
miRNA:   3'- -GCUG---CCGuCGCUGA-----------CGG--GGAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 28017 0.69 0.231641
Target:  5'- aGGCGcGCcuGGCGAC-GCCCagcuucgCUACGCCUa -3'
miRNA:   3'- gCUGC-CG--UCGCUGaCGGG-------GAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 4913 0.69 0.232233
Target:  5'- uCGACaGGuCGGCGACgaccagcuucuUGCCCUcggGCGCCa -3'
miRNA:   3'- -GCUG-CC-GUCGCUG-----------ACGGGGa--UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 8141 0.69 0.244345
Target:  5'- uGugGGCGuGCGggugucggcGCUGCguCCCUgcgcguGCGCCCg -3'
miRNA:   3'- gCugCCGU-CGC---------UGACG--GGGA------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 9209 0.69 0.250596
Target:  5'- uCGGCGGC-GCGGCgcacGUUCUgcggcGCGCCCg -3'
miRNA:   3'- -GCUGCCGuCGCUGa---CGGGGa----UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.