miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 5' -60.8 NC_005357.1 + 248 0.72 0.144602
Target:  5'- cCGGCGGUAGCGAau-CCCCagGCGCUUg -3'
miRNA:   3'- -GCUGCCGUCGCUgacGGGGa-UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 687 0.68 0.270141
Target:  5'- aCGGCGGCgccGGCcgGGCcGCCCaagaUAcCGCCCa -3'
miRNA:   3'- -GCUGCCG---UCG--CUGaCGGGg---AU-GCGGG- -5'
26589 5' -60.8 NC_005357.1 + 1044 0.67 0.305412
Target:  5'- cCGGCGGCAGCa--UGUCgCCgcgaaccgGCGUCCa -3'
miRNA:   3'- -GCUGCCGUCGcugACGG-GGa-------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 1157 0.67 0.312877
Target:  5'- aCGGCGGCGGUcAC-GCCCCacauagucuCGCCg -3'
miRNA:   3'- -GCUGCCGUCGcUGaCGGGGau-------GCGGg -5'
26589 5' -60.8 NC_005357.1 + 2425 0.68 0.270141
Target:  5'- uGuACGGCAGCaGGCcgGCCUCgaagaucgGCGCCa -3'
miRNA:   3'- gC-UGCCGUCG-CUGa-CGGGGa-------UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 3699 0.67 0.336095
Target:  5'- -cACGGCGacGCG-CUGCCCCaugcgGCGCauCCg -3'
miRNA:   3'- gcUGCCGU--CGCuGACGGGGa----UGCG--GG- -5'
26589 5' -60.8 NC_005357.1 + 4757 0.68 0.267466
Target:  5'- -cACGGCcGCGAUguucucggcguucGCCCacaCUGCGCCCa -3'
miRNA:   3'- gcUGCCGuCGCUGa------------CGGG---GAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 4913 0.69 0.232233
Target:  5'- uCGACaGGuCGGCGACgaccagcuucuUGCCCUcggGCGCCa -3'
miRNA:   3'- -GCUG-CC-GUCGCUG-----------ACGGGGa--UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 4923 0.67 0.344109
Target:  5'- aCGuCGGCAGCGA-UGCCCgCgACGgUCu -3'
miRNA:   3'- -GCuGCCGUCGCUgACGGG-GaUGCgGG- -5'
26589 5' -60.8 NC_005357.1 + 5154 0.69 0.256978
Target:  5'- aGGCGGCcGUcGCUGCUC--ACGCCCu -3'
miRNA:   3'- gCUGCCGuCGcUGACGGGgaUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 5759 0.66 0.395028
Target:  5'- ---gGGCAGCGAgUGCgCCaGgGCCUu -3'
miRNA:   3'- gcugCCGUCGCUgACGgGGaUgCGGG- -5'
26589 5' -60.8 NC_005357.1 + 6324 0.66 0.360546
Target:  5'- aGAC-GCGGCGcguuCcGCCCCagccaaaGCGCCCg -3'
miRNA:   3'- gCUGcCGUCGCu---GaCGGGGa------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 7218 0.67 0.344109
Target:  5'- -cACGGCAGCauCUGCgCC-GCGCUCa -3'
miRNA:   3'- gcUGCCGUCGcuGACGgGGaUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 7772 0.66 0.386209
Target:  5'- --cCGGC-GCGAuCUGCgCCgGCGUCCa -3'
miRNA:   3'- gcuGCCGuCGCU-GACGgGGaUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 7895 0.67 0.318184
Target:  5'- gGGCGGC-GCGugcguagaucgccaGCUGCUCgUUGCGCUCg -3'
miRNA:   3'- gCUGCCGuCGC--------------UGACGGG-GAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 7988 0.66 0.377522
Target:  5'- aGGCaGCAGCaccacggcgucgGACgUGCCCUUgGCGCCa -3'
miRNA:   3'- gCUGcCGUCG------------CUG-ACGGGGA-UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 8130 0.67 0.336095
Target:  5'- --uCGGCGGUGACUucccaGCCCUUGcCGUUCa -3'
miRNA:   3'- gcuGCCGUCGCUGA-----CGGGGAU-GCGGG- -5'
26589 5' -60.8 NC_005357.1 + 8141 0.69 0.244345
Target:  5'- uGugGGCGuGCGggugucggcGCUGCguCCCUgcgcguGCGCCCg -3'
miRNA:   3'- gCugCCGU-CGC---------UGACG--GGGA------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 8610 0.69 0.250596
Target:  5'- gGAUGGCGuaGGCgugGCCggUACGCCCu -3'
miRNA:   3'- gCUGCCGUcgCUGa--CGGggAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 8671 0.71 0.17439
Target:  5'- --gUGuGCAGCGGCUGCUgCgcCGCCCa -3'
miRNA:   3'- gcuGC-CGUCGCUGACGGgGauGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.