miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 5' -60.8 NC_005357.1 + 33077 0.67 0.312877
Target:  5'- gGuCGcGCAGCGACgcggcgGCCuacauCCU-CGCCCa -3'
miRNA:   3'- gCuGC-CGUCGCUGa-----CGG-----GGAuGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 687 0.68 0.270141
Target:  5'- aCGGCGGCgccGGCcgGGCcGCCCaagaUAcCGCCCa -3'
miRNA:   3'- -GCUGCCG---UCG--CUGaCGGGg---AU-GCGGG- -5'
26589 5' -60.8 NC_005357.1 + 36050 0.68 0.290895
Target:  5'- -cGCGGCGGcCGACcuggUGUaaCCCaGCGCCCc -3'
miRNA:   3'- gcUGCCGUC-GCUG----ACG--GGGaUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 27707 0.67 0.305412
Target:  5'- gCGcCGGCAGCGGCUcGCCgCCggucauggACuugaugagGCCCu -3'
miRNA:   3'- -GCuGCCGUCGCUGA-CGG-GGa-------UG--------CGGG- -5'
26589 5' -60.8 NC_005357.1 + 40101 0.67 0.305412
Target:  5'- gGACaGGCugcGCGAuCUGUgCCUgucgcuggACGCCCg -3'
miRNA:   3'- gCUG-CCGu--CGCU-GACGgGGA--------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 1044 0.67 0.305412
Target:  5'- cCGGCGGCAGCa--UGUCgCCgcgaaccgGCGUCCa -3'
miRNA:   3'- -GCUGCCGUCGcugACGG-GGa-------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 29285 0.67 0.305412
Target:  5'- aCGugGuaGGCGACgaacugcugGCCCU--UGCCCa -3'
miRNA:   3'- -GCugCcgUCGCUGa--------CGGGGauGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 37082 0.67 0.312877
Target:  5'- aGGCGGCcacgcAGCGcgaUGCCaugCUGCGCCa -3'
miRNA:   3'- gCUGCCG-----UCGCug-ACGGg--GAUGCGGg -5'
26589 5' -60.8 NC_005357.1 + 1157 0.67 0.312877
Target:  5'- aCGGCGGCGGUcAC-GCCCCacauagucuCGCCg -3'
miRNA:   3'- -GCUGCCGUCGcUGaCGGGGau-------GCGGg -5'
26589 5' -60.8 NC_005357.1 + 2425 0.68 0.270141
Target:  5'- uGuACGGCAGCaGGCcgGCCUCgaagaucgGCGCCa -3'
miRNA:   3'- gC-UGCCGUCG-CUGa-CGGGGa-------UGCGGg -5'
26589 5' -60.8 NC_005357.1 + 4757 0.68 0.267466
Target:  5'- -cACGGCcGCGAUguucucggcguucGCCCacaCUGCGCCCa -3'
miRNA:   3'- gcUGCCGuCGCUGa------------CGGG---GAUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 26033 0.69 0.256978
Target:  5'- gCGAUGGCAucaaagcccgcGCGGCgggcgcGCUCCaUGCGCUCg -3'
miRNA:   3'- -GCUGCCGU-----------CGCUGa-----CGGGG-AUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 37275 0.75 0.098553
Target:  5'- gGGCGugaGCAGCGACgGCCgCCUGCGCg- -3'
miRNA:   3'- gCUGC---CGUCGCUGaCGG-GGAUGCGgg -5'
26589 5' -60.8 NC_005357.1 + 14818 0.71 0.17439
Target:  5'- --uCGGCGGCG-CUGCCUu--CGCCCa -3'
miRNA:   3'- gcuGCCGUCGCuGACGGGgauGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 41316 0.7 0.198905
Target:  5'- uCGACGGCaAGCcuUUGCCgCCUACcGCCg -3'
miRNA:   3'- -GCUGCCG-UCGcuGACGG-GGAUG-CGGg -5'
26589 5' -60.8 NC_005357.1 + 40041 0.7 0.209524
Target:  5'- ---aGGCAGCGACcGCCaugCCgUGCGCCUc -3'
miRNA:   3'- gcugCCGUCGCUGaCGG---GG-AUGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 8141 0.69 0.244345
Target:  5'- uGugGGCGuGCGggugucggcGCUGCguCCCUgcgcguGCGCCCg -3'
miRNA:   3'- gCugCCGU-CGC---------UGACG--GGGA------UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 9209 0.69 0.250596
Target:  5'- uCGGCGGC-GCGGCgcacGUUCUgcggcGCGCCCg -3'
miRNA:   3'- -GCUGCCGuCGCUGa---CGGGGa----UGCGGG- -5'
26589 5' -60.8 NC_005357.1 + 10694 0.69 0.256978
Target:  5'- uGACGGCAGCGcgcACgGCCUCg--GCCg -3'
miRNA:   3'- gCUGCCGUCGC---UGaCGGGGaugCGGg -5'
26589 5' -60.8 NC_005357.1 + 23654 0.69 0.256978
Target:  5'- gCGGCgGGCAGCaACUGCaCCagGCGaCCCu -3'
miRNA:   3'- -GCUG-CCGUCGcUGACG-GGgaUGC-GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.