miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26590 3' -62.3 NC_005357.1 + 32545 1.06 0.000205
Target:  5'- cAGGAUGCUGCCGCCGGCGAUGCCGCUc -3'
miRNA:   3'- -UCCUACGACGGCGGCCGCUACGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 16694 0.78 0.033451
Target:  5'- cAGcGUGCUGCCGCCGGUGAggacgacgaccccGCCGCg -3'
miRNA:   3'- -UCcUACGACGGCGGCCGCUa------------CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 18341 0.74 0.067401
Target:  5'- cGGGGUGCccgUGCC-CCGcGCGGUcGCCGCUa -3'
miRNA:   3'- -UCCUACG---ACGGcGGC-CGCUA-CGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 23373 0.73 0.084285
Target:  5'- gAGGAcacGCUgaucgacGCCGCCGGCG--GCCGCUa -3'
miRNA:   3'- -UCCUa--CGA-------CGGCGGCCGCuaCGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 5480 0.73 0.084522
Target:  5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3'
miRNA:   3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 19166 0.73 0.088911
Target:  5'- uGGAUGCguugucgcugcccgUGCCGCCGGCGucgaugauguucugGCCGUUc -3'
miRNA:   3'- uCCUACG--------------ACGGCGGCCGCua------------CGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 37547 0.72 0.10752
Target:  5'- aAGGAcgcaugauUGCgugGCuCGCCGGCGAggauuggaagcugGCCGCUu -3'
miRNA:   3'- -UCCU--------ACGa--CG-GCGGCCGCUa------------CGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 970 0.71 0.128321
Target:  5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3'
miRNA:   3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 28804 0.71 0.13189
Target:  5'- cGGAcuUGCUGCCGCUacCGAUGCUGUc -3'
miRNA:   3'- uCCU--ACGACGGCGGccGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 41389 0.71 0.13189
Target:  5'- cGGcgacAUGCUGCCGCCGGCcguggccuuccaGGUGUucgaCGCUg -3'
miRNA:   3'- uCC----UACGACGGCGGCCG------------CUACG----GCGA- -5'
26590 3' -62.3 NC_005357.1 + 31504 0.7 0.13555
Target:  5'- -----cUUGCCGCCGGCG-UGCUGCUg -3'
miRNA:   3'- uccuacGACGGCGGCCGCuACGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 14629 0.7 0.139304
Target:  5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3'
miRNA:   3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5'
26590 3' -62.3 NC_005357.1 + 29111 0.7 0.151143
Target:  5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3'
miRNA:   3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 32868 0.7 0.153618
Target:  5'- cGGAUGCUcGCCaCCGGCGAgcagaucgcacugGCCGa- -3'
miRNA:   3'- uCCUACGA-CGGcGGCCGCUa------------CGGCga -5'
26590 3' -62.3 NC_005357.1 + 33198 0.69 0.163889
Target:  5'- uGGAa-CUGCCGCCgGGCGc-GCCGCa -3'
miRNA:   3'- uCCUacGACGGCGG-CCGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 21733 0.69 0.163889
Target:  5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3'
miRNA:   3'- uCCUACGacGGCggC-CGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 37996 0.69 0.177594
Target:  5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3'
miRNA:   3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 16805 0.69 0.177594
Target:  5'- uGGAcGC-GCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- uCCUaCGaCGGCGGCCGCUa---CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 30202 0.69 0.182384
Target:  5'- ----cGCUGuuGCCGGUG-UGCUGCg -3'
miRNA:   3'- uccuaCGACggCGGCCGCuACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 19310 0.69 0.182384
Target:  5'- cAGGAgccguuaccGCUGUCGCCgugGGCGccGCCGUUg -3'
miRNA:   3'- -UCCUa--------CGACGGCGG---CCGCuaCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.