miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26590 3' -62.3 NC_005357.1 + 970 0.71 0.128321
Target:  5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3'
miRNA:   3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 1848 0.66 0.261526
Target:  5'- cAGGAUGUUGCCGCCGucuugcagguucaGCccgugGCCGg- -3'
miRNA:   3'- -UCCUACGACGGCGGC-------------CGcua--CGGCga -5'
26590 3' -62.3 NC_005357.1 + 3330 0.66 0.268858
Target:  5'- uAGG-UGCUGUCGCUGGUGGaaUGCgucaCGCc -3'
miRNA:   3'- -UCCuACGACGGCGGCCGCU--ACG----GCGa -5'
26590 3' -62.3 NC_005357.1 + 3925 0.66 0.282612
Target:  5'- gGGGAcgcGCUGCCGUCcGCGAUGgucaCGUUg -3'
miRNA:   3'- -UCCUa--CGACGGCGGcCGCUACg---GCGA- -5'
26590 3' -62.3 NC_005357.1 + 4378 0.66 0.275666
Target:  5'- cGGAUGC-GCaGCCaGGCGccGUCGCg -3'
miRNA:   3'- uCCUACGaCGgCGG-CCGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 4632 0.67 0.232621
Target:  5'- gGGGAUGCUggGCCacgcugcGUCGGCcaucgcgucaaggucGAUGCCGUa -3'
miRNA:   3'- -UCCUACGA--CGG-------CGGCCG---------------CUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 4816 0.67 0.255649
Target:  5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3'
miRNA:   3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 5096 0.66 0.281211
Target:  5'- cAGGcgGCcggcccagcguccggUGCgGCUGGCGccguugaacugcaacGUGCCGCg -3'
miRNA:   3'- -UCCuaCG---------------ACGgCGGCCGC---------------UACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 5183 0.67 0.23684
Target:  5'- gAGGGuuuuguauuUGCUGgUGCUGGUGGUGCUGg- -3'
miRNA:   3'- -UCCU---------ACGACgGCGGCCGCUACGGCga -5'
26590 3' -62.3 NC_005357.1 + 5480 0.73 0.084522
Target:  5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3'
miRNA:   3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 8285 0.68 0.213579
Target:  5'- cAGGGccacGCUGCCggggcagugcaGCCaGCGGUGCgCGCUg -3'
miRNA:   3'- -UCCUa---CGACGG-----------CGGcCGCUACG-GCGA- -5'
26590 3' -62.3 NC_005357.1 + 8512 0.67 0.255649
Target:  5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3'
miRNA:   3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5'
26590 3' -62.3 NC_005357.1 + 8679 0.66 0.262186
Target:  5'- cGGcUGCUgcGCCGCCcaGGUGugcGCCGCg -3'
miRNA:   3'- uCCuACGA--CGGCGG--CCGCua-CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 9344 0.68 0.213579
Target:  5'- gAGGAUGUagGCCGCCG-CGucGCUGCg -3'
miRNA:   3'- -UCCUACGa-CGGCGGCcGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 14267 0.67 0.230832
Target:  5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3'
miRNA:   3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5'
26590 3' -62.3 NC_005357.1 + 14629 0.7 0.139304
Target:  5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3'
miRNA:   3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5'
26590 3' -62.3 NC_005357.1 + 14819 0.66 0.275666
Target:  5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3'
miRNA:   3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 14898 0.66 0.266842
Target:  5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3'
miRNA:   3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5'
26590 3' -62.3 NC_005357.1 + 14994 0.68 0.213579
Target:  5'- cAGGGccUGCgGCCGCCGggcGCGGUGCgccaggCGCg -3'
miRNA:   3'- -UCCU--ACGaCGGCGGC---CGCUACG------GCGa -5'
26590 3' -62.3 NC_005357.1 + 16182 0.68 0.208078
Target:  5'- cGGGUGCccgUGCCuUCGGCGAcGCgCGCa -3'
miRNA:   3'- uCCUACG---ACGGcGGCCGCUaCG-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.