Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26590 | 3' | -62.3 | NC_005357.1 | + | 32545 | 1.06 | 0.000205 |
Target: 5'- cAGGAUGCUGCCGCCGGCGAUGCCGCUc -3' miRNA: 3'- -UCCUACGACGGCGGCCGCUACGGCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 4816 | 0.67 | 0.255649 |
Target: 5'- cGGGAuUGCUG--GCCGGCGAcagGUCGCc -3' miRNA: 3'- -UCCU-ACGACggCGGCCGCUa--CGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 8512 | 0.67 | 0.255649 |
Target: 5'- -cGAUGCccuugaUGUCGCCGGCGAacuUGCC-Ca -3' miRNA: 3'- ucCUACG------ACGGCGGCCGCU---ACGGcGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 19042 | 0.67 | 0.255649 |
Target: 5'- uGGuaGCgGCCGCCGGCGgcGUCGa- -3' miRNA: 3'- uCCuaCGaCGGCGGCCGCuaCGGCga -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 36506 | 0.67 | 0.255649 |
Target: 5'- uGGGAUGCcGCCaG-CGGCGAaaagaUGCCGg- -3' miRNA: 3'- -UCCUACGaCGG-CgGCCGCU-----ACGGCga -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 14898 | 0.66 | 0.266842 |
Target: 5'- cAGGGucugcgcggcgaucUGCUGCUgGCCGGCcucaaGUGCCGaCUg -3' miRNA: 3'- -UCCU--------------ACGACGG-CGGCCGc----UACGGC-GA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 18351 | 0.66 | 0.268858 |
Target: 5'- aGGGAUGaccaccuguUUGCCGgCGGCGAgguuggccuUGCCGa- -3' miRNA: 3'- -UCCUAC---------GACGGCgGCCGCU---------ACGGCga -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 14819 | 0.66 | 0.275666 |
Target: 5'- cGGcGgcGCUGCCuucGCCcaGGuCGAUGCCGUUg -3' miRNA: 3'- -UC-CuaCGACGG---CGG--CC-GCUACGGCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 3925 | 0.66 | 0.282612 |
Target: 5'- gGGGAcgcGCUGCCGUCcGCGAUGgucaCGUUg -3' miRNA: 3'- -UCCUa--CGACGGCGGcCGCUACg---GCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 30552 | 0.67 | 0.249247 |
Target: 5'- cGGGucuuuGUGCcgGCCGCUGuaGAUGCgGCa -3' miRNA: 3'- -UCC-----UACGa-CGGCGGCcgCUACGgCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 14267 | 0.67 | 0.230832 |
Target: 5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3' miRNA: 3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 39591 | 0.68 | 0.213579 |
Target: 5'- -uGGUGCUGgCGCCGcuGCGcgugGCCGCg -3' miRNA: 3'- ucCUACGACgGCGGC--CGCua--CGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 5480 | 0.73 | 0.084522 |
Target: 5'- gAGG-UGUUGCCGaugggggguaCGGCGAUGCUGCc -3' miRNA: 3'- -UCCuACGACGGCg---------GCCGCUACGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 19166 | 0.73 | 0.088911 |
Target: 5'- uGGAUGCguugucgcugcccgUGCCGCCGGCGucgaugauguucugGCCGUUc -3' miRNA: 3'- uCCUACG--------------ACGGCGGCCGCua------------CGGCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 37547 | 0.72 | 0.10752 |
Target: 5'- aAGGAcgcaugauUGCgugGCuCGCCGGCGAggauuggaagcugGCCGCUu -3' miRNA: 3'- -UCCU--------ACGa--CG-GCGGCCGCUa------------CGGCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 970 | 0.71 | 0.128321 |
Target: 5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3' miRNA: 3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 31504 | 0.7 | 0.13555 |
Target: 5'- -----cUUGCCGCCGGCG-UGCUGCUg -3' miRNA: 3'- uccuacGACGGCGGCCGCuACGGCGA- -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 29111 | 0.7 | 0.151143 |
Target: 5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3' miRNA: 3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 21733 | 0.69 | 0.163889 |
Target: 5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3' miRNA: 3'- uCCUACGacGGCggC-CGCuaCGGCGa -5' |
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26590 | 3' | -62.3 | NC_005357.1 | + | 37996 | 0.69 | 0.177594 |
Target: 5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3' miRNA: 3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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