miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 3' -58.7 NC_005357.1 + 36249 0.66 0.438668
Target:  5'- aAACGCUGCgGCaagACCGgCCUGcGCUGg -3'
miRNA:   3'- -UUGCGAUGgCG---UGGCaGGACcCGAUg -5'
26591 3' -58.7 NC_005357.1 + 34314 0.66 0.438668
Target:  5'- cAACGCcgGCCGCGCgGUgCaGGGCc-- -3'
miRNA:   3'- -UUGCGa-UGGCGUGgCAgGaCCCGaug -5'
26591 3' -58.7 NC_005357.1 + 8543 0.66 0.428926
Target:  5'- aAACGCUcgacaGCCGCGCCGauggcGGGCaGCg -3'
miRNA:   3'- -UUGCGA-----UGGCGUGGCagga-CCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 27427 0.66 0.428926
Target:  5'- uGGCGC-ACCGCGCCcggcggccgcagGcCCUGGcGCUGg -3'
miRNA:   3'- -UUGCGaUGGCGUGG------------CaGGACC-CGAUg -5'
26591 3' -58.7 NC_005357.1 + 14241 0.66 0.428926
Target:  5'- cAAgGC-GCCGCACC-UgCUGGGCguggGCa -3'
miRNA:   3'- -UUgCGaUGGCGUGGcAgGACCCGa---UG- -5'
26591 3' -58.7 NC_005357.1 + 20740 0.66 0.419314
Target:  5'- cAUGCUGCUgGCGCCGUagaGGcGCUGCg -3'
miRNA:   3'- uUGCGAUGG-CGUGGCAggaCC-CGAUG- -5'
26591 3' -58.7 NC_005357.1 + 1678 0.66 0.419314
Target:  5'- uGAUGCUGCCGCGCagguaGUcgagaaauucgCCgUGGGCcgGCg -3'
miRNA:   3'- -UUGCGAUGGCGUGg----CA-----------GG-ACCCGa-UG- -5'
26591 3' -58.7 NC_005357.1 + 21260 0.66 0.409833
Target:  5'- cGCGCagcagGCCGCGCUGUugaaCCaGGGCgcggACa -3'
miRNA:   3'- uUGCGa----UGGCGUGGCA----GGaCCCGa---UG- -5'
26591 3' -58.7 NC_005357.1 + 23387 0.66 0.409833
Target:  5'- cGACGCcGCCgGCgGCCGcuaCCaGGGCUACc -3'
miRNA:   3'- -UUGCGaUGG-CG-UGGCa--GGaCCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 8549 0.67 0.373278
Target:  5'- -uCGCagGCCGCGCuCGaccucaUCCUGGGCg-- -3'
miRNA:   3'- uuGCGa-UGGCGUG-GC------AGGACCCGaug -5'
26591 3' -58.7 NC_005357.1 + 35373 0.67 0.373278
Target:  5'- cGACGCUGCCGC-CCGaggCCaUGcgccuGCUGCa -3'
miRNA:   3'- -UUGCGAUGGCGuGGCa--GG-ACc----CGAUG- -5'
26591 3' -58.7 NC_005357.1 + 28814 0.67 0.364491
Target:  5'- gAGCaGCcAgCGCGCCGUCgUcGGGUUGCg -3'
miRNA:   3'- -UUG-CGaUgGCGUGGCAGgA-CCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 11835 0.67 0.347352
Target:  5'- aGAC-CgGCCGCGCCGcgguuggCCUGGGCg-- -3'
miRNA:   3'- -UUGcGaUGGCGUGGCa------GGACCCGaug -5'
26591 3' -58.7 NC_005357.1 + 8643 0.68 0.330797
Target:  5'- aAACGCcccagGCCGCGCCGUacucgCUGugugcagcGGCUGCu -3'
miRNA:   3'- -UUGCGa----UGGCGUGGCAg----GAC--------CCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 12826 0.68 0.329984
Target:  5'- cGGCGCUggacaacuggcaaACCGCGCg--CCUGGGCgcgGCc -3'
miRNA:   3'- -UUGCGA-------------UGGCGUGgcaGGACCCGa--UG- -5'
26591 3' -58.7 NC_005357.1 + 427 0.68 0.307067
Target:  5'- -uCGUcgGCCGUACCuuGUCgUUGGGCUGCu -3'
miRNA:   3'- uuGCGa-UGGCGUGG--CAG-GACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 34257 0.69 0.277486
Target:  5'- gGACGCca--GCGCCuUCCUGGGCcGCa -3'
miRNA:   3'- -UUGCGauggCGUGGcAGGACCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 22836 0.7 0.246329
Target:  5'- cGCGCUGCCGacaGCCGaCagcgcgcgcugcgaaUUGGGCUGCu -3'
miRNA:   3'- uUGCGAUGGCg--UGGCaG---------------GACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 10078 0.7 0.243762
Target:  5'- cGGCgGCgACCGCAgCGaCCUGGGCgGCg -3'
miRNA:   3'- -UUG-CGaUGGCGUgGCaGGACCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 27587 0.7 0.23744
Target:  5'- cGGCGCUggccgccaACgGCAUCGaCCUGGGCgaagGCa -3'
miRNA:   3'- -UUGCGA--------UGgCGUGGCaGGACCCGa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.