miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 5' -51.1 NC_005357.1 + 33605 1.14 0.000926
Target:  5'- aCGGUAUCAAGGCCGACACCAAGUACCg -3'
miRNA:   3'- -GCCAUAGUUCCGGCUGUGGUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 23295 0.78 0.262233
Target:  5'- aCGGUGUgGGGGCCGAaCACCcuGcaUACCa -3'
miRNA:   3'- -GCCAUAgUUCCGGCU-GUGGuuC--AUGG- -5'
26591 5' -51.1 NC_005357.1 + 19207 0.74 0.413045
Target:  5'- uCGGUGgcCGAGGCCGAgGCCGAauucACCg -3'
miRNA:   3'- -GCCAUa-GUUCCGGCUgUGGUUca--UGG- -5'
26591 5' -51.1 NC_005357.1 + 14908 0.74 0.432808
Target:  5'- gCGGcgAUCugcugcuGGCCGGCcUCAAGUGCCg -3'
miRNA:   3'- -GCCa-UAGuu-----CCGGCUGuGGUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 35693 0.74 0.442894
Target:  5'- gGGgcgcCAAGGCCGACGCC--GUGCUc -3'
miRNA:   3'- gCCaua-GUUCCGGCUGUGGuuCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 41733 0.73 0.461377
Target:  5'- gCGGUAUCuugggcggcccGGCCGGCGCCGccguAGgcgGCCu -3'
miRNA:   3'- -GCCAUAGuu---------CCGGCUGUGGU----UCa--UGG- -5'
26591 5' -51.1 NC_005357.1 + 16687 0.73 0.463455
Target:  5'- uCGGcAUcCAGGGCCGugACCAcGUAgCg -3'
miRNA:   3'- -GCCaUA-GUUCCGGCugUGGUuCAUgG- -5'
26591 5' -51.1 NC_005357.1 + 23952 0.73 0.484506
Target:  5'- cCGGUGgaCGAaucGGCCGACGCCGccGGcGCCg -3'
miRNA:   3'- -GCCAUa-GUU---CCGGCUGUGGU--UCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 31959 0.73 0.484506
Target:  5'- cCGGUGcugcgcgacuUCcAGGgCGACGCCAAGggcGCCa -3'
miRNA:   3'- -GCCAU----------AGuUCCgGCUGUGGUUCa--UGG- -5'
26591 5' -51.1 NC_005357.1 + 13828 0.73 0.495201
Target:  5'- cCGGU-UCAAGGaacugaCCGACACCAcGcUGCCg -3'
miRNA:   3'- -GCCAuAGUUCC------GGCUGUGGUuC-AUGG- -5'
26591 5' -51.1 NC_005357.1 + 14105 0.72 0.516904
Target:  5'- aGGccAUCGAGuCCGACGCCGAGcgcGCCg -3'
miRNA:   3'- gCCa-UAGUUCcGGCUGUGGUUCa--UGG- -5'
26591 5' -51.1 NC_005357.1 + 38092 0.72 0.561363
Target:  5'- aCGGccagcAUCAAGGCUGGCACCAucGUGg- -3'
miRNA:   3'- -GCCa----UAGUUCCGGCUGUGGUu-CAUgg -5'
26591 5' -51.1 NC_005357.1 + 654 0.71 0.583995
Target:  5'- uCGGUGccCAAGGCUGuagcCACCAGGccGCCu -3'
miRNA:   3'- -GCCAUa-GUUCCGGCu---GUGGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 4654 0.71 0.6068
Target:  5'- uCGGccaucgcGUCAAGGUCGAUGCCGuaGGUaGCCg -3'
miRNA:   3'- -GCCa------UAGUUCCGGCUGUGGU--UCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 4553 0.71 0.6068
Target:  5'- uGGgcUUGAGGCCGAaguCGCCGAGgcGCUg -3'
miRNA:   3'- gCCauAGUUCCGGCU---GUGGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 7183 0.71 0.6068
Target:  5'- uCGGauUCGGGGgCGACGCUggGcuUGCCa -3'
miRNA:   3'- -GCCauAGUUCCgGCUGUGGuuC--AUGG- -5'
26591 5' -51.1 NC_005357.1 + 13399 0.71 0.617098
Target:  5'- gGGUAUCGAccuGGCCGaagcgcgGCGCCuGGUcGCCu -3'
miRNA:   3'- gCCAUAGUU---CCGGC-------UGUGGuUCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 10311 0.7 0.642304
Target:  5'- gGGcGUCGAGGUCGGCagcgGCCAGGgcguugagcaacgcgGCCg -3'
miRNA:   3'- gCCaUAGUUCCGGCUG----UGGUUCa--------------UGG- -5'
26591 5' -51.1 NC_005357.1 + 34392 0.7 0.664038
Target:  5'- gCGGUugagcGUCGAGGCUGuCACCGgcgaagcuGGcGCCa -3'
miRNA:   3'- -GCCA-----UAGUUCCGGCuGUGGU--------UCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 26890 0.7 0.675435
Target:  5'- uGGacGUgGAGGCCGGCACC--GUGCa -3'
miRNA:   3'- gCCa-UAgUUCCGGCUGUGGuuCAUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.