miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 5' -51.1 NC_005357.1 + 26877 0.67 0.805108
Target:  5'- gCGGaagCAAGGCUGACGgCAGuGUgACCu -3'
miRNA:   3'- -GCCauaGUUCCGGCUGUgGUU-CA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 39669 0.69 0.742446
Target:  5'- aGGUGUCGGcaguGGUCGGCAcgcCCGAGcagcGCCg -3'
miRNA:   3'- gCCAUAGUU----CCGGCUGU---GGUUCa---UGG- -5'
26591 5' -51.1 NC_005357.1 + 38663 0.68 0.753267
Target:  5'- gGGUcgaacUCAAGGCCcccGGCGagAAGUGCCg -3'
miRNA:   3'- gCCAu----AGUUCCGG---CUGUggUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 34500 0.68 0.753267
Target:  5'- uGGcGUgAAGGUgGACGCCGAGcGCa -3'
miRNA:   3'- gCCaUAgUUCCGgCUGUGGUUCaUGg -5'
26591 5' -51.1 NC_005357.1 + 8544 0.68 0.774494
Target:  5'- aGGUAUCGcAGGCCG-CGCUcg--ACCu -3'
miRNA:   3'- gCCAUAGU-UCCGGCuGUGGuucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 928 0.68 0.774494
Target:  5'- uGaGUGUCAggGGGCCGAUcuguCCGuccugcgcGGUGCCc -3'
miRNA:   3'- gC-CAUAGU--UCCGGCUGu---GGU--------UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 17963 0.68 0.784875
Target:  5'- gCGGUGUCAccccaccgaAGGagacuCGuuACACCAAGUcGCCg -3'
miRNA:   3'- -GCCAUAGU---------UCCg----GC--UGUGGUUCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 21799 0.68 0.795083
Target:  5'- uGGU-UCuuGGCgGACACCGgcAGUugCa -3'
miRNA:   3'- gCCAuAGuuCCGgCUGUGGU--UCAugG- -5'
26591 5' -51.1 NC_005357.1 + 15518 0.67 0.805108
Target:  5'- gCGGUGaugggC-AGGCCGAUAUgCAcGGUGCCg -3'
miRNA:   3'- -GCCAUa----GuUCCGGCUGUG-GU-UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 25809 0.69 0.742446
Target:  5'- uCGGUAUCGuugaucugcaccGGGCCGccguugGCGCCGgucAGUuCCa -3'
miRNA:   3'- -GCCAUAGU------------UCCGGC------UGUGGU---UCAuGG- -5'
26591 5' -51.1 NC_005357.1 + 35087 0.69 0.731504
Target:  5'- ---gGUCGAGGCCG-CGCuCAAG-GCCa -3'
miRNA:   3'- gccaUAGUUCCGGCuGUG-GUUCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 5564 0.69 0.719344
Target:  5'- aCGGUAUCGAcggcgccaacgcuGGCCGcCACCGuGUcgauguccGCCu -3'
miRNA:   3'- -GCCAUAGUU-------------CCGGCuGUGGUuCA--------UGG- -5'
26591 5' -51.1 NC_005357.1 + 14908 0.74 0.432808
Target:  5'- gCGGcgAUCugcugcuGGCCGGCcUCAAGUGCCg -3'
miRNA:   3'- -GCCa-UAGuu-----CCGGCUGuGGUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 35693 0.74 0.442894
Target:  5'- gGGgcgcCAAGGCCGACGCC--GUGCUc -3'
miRNA:   3'- gCCaua-GUUCCGGCUGUGGuuCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 16687 0.73 0.463455
Target:  5'- uCGGcAUcCAGGGCCGugACCAcGUAgCg -3'
miRNA:   3'- -GCCaUA-GUUCCGGCugUGGUuCAUgG- -5'
26591 5' -51.1 NC_005357.1 + 654 0.71 0.583995
Target:  5'- uCGGUGccCAAGGCUGuagcCACCAGGccGCCu -3'
miRNA:   3'- -GCCAUa-GUUCCGGCu---GUGGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 34392 0.7 0.664038
Target:  5'- gCGGUugagcGUCGAGGCUGuCACCGgcgaagcuGGcGCCa -3'
miRNA:   3'- -GCCA-----UAGUUCCGGCuGUGGU--------UCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 37218 0.7 0.686787
Target:  5'- gGGUAUCcgguugcAGGCCaGCACCAccAGcACCa -3'
miRNA:   3'- gCCAUAGu------UCCGGcUGUGGU--UCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 40915 0.69 0.70931
Target:  5'- uCGGUAuuUCGAGGgcaaCGuCAUCAAGUACg -3'
miRNA:   3'- -GCCAU--AGUUCCg---GCuGUGGUUCAUGg -5'
26591 5' -51.1 NC_005357.1 + 32318 0.69 0.70931
Target:  5'- cCGccAUCAAGGCCGGCGucCCGAcaACCg -3'
miRNA:   3'- -GCcaUAGUUCCGGCUGU--GGUUcaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.