miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 5' -51.1 NC_005357.1 + 339 0.66 0.885192
Target:  5'- gCGGUggcGUCGcgcagcAGGCCGucCGCCAGGc-CCg -3'
miRNA:   3'- -GCCA---UAGU------UCCGGCu-GUGGUUCauGG- -5'
26591 5' -51.1 NC_005357.1 + 654 0.71 0.583995
Target:  5'- uCGGUGccCAAGGCUGuagcCACCAGGccGCCu -3'
miRNA:   3'- -GCCAUa-GUUCCGGCu---GUGGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 928 0.68 0.774494
Target:  5'- uGaGUGUCAggGGGCCGAUcuguCCGuccugcgcGGUGCCc -3'
miRNA:   3'- gC-CAUAGU--UCCGGCUGu---GGU--------UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 1692 0.67 0.843126
Target:  5'- aGGUAgUCGAGaaauucGCCGugGgCCGGcGUGCCg -3'
miRNA:   3'- gCCAU-AGUUC------CGGCugU-GGUU-CAUGG- -5'
26591 5' -51.1 NC_005357.1 + 4553 0.71 0.6068
Target:  5'- uGGgcUUGAGGCCGAaguCGCCGAGgcGCUg -3'
miRNA:   3'- gCCauAGUUCCGGCU---GUGGUUCa-UGG- -5'
26591 5' -51.1 NC_005357.1 + 4654 0.71 0.6068
Target:  5'- uCGGccaucgcGUCAAGGUCGAUGCCGuaGGUaGCCg -3'
miRNA:   3'- -GCCa------UAGUUCCGGCUGUGGU--UCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 4823 0.68 0.773447
Target:  5'- ---gGUCGGGGCCGGCGCCGucgucgaauucacGGaaagcgGCCa -3'
miRNA:   3'- gccaUAGUUCCGGCUGUGGU-------------UCa-----UGG- -5'
26591 5' -51.1 NC_005357.1 + 5488 0.66 0.869157
Target:  5'- uGGUcugGUCGAGGUgccauaGCGCCAacucGGUGCCu -3'
miRNA:   3'- gCCA---UAGUUCCGgc----UGUGGU----UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 5564 0.69 0.719344
Target:  5'- aCGGUAUCGAcggcgccaacgcuGGCCGcCACCGuGUcgauguccGCCu -3'
miRNA:   3'- -GCCAUAGUU-------------CCGGCuGUGGUuCA--------UGG- -5'
26591 5' -51.1 NC_005357.1 + 6356 0.68 0.795083
Target:  5'- cCGGcccgAAGGCCGgggcgcuggguuACACCAGGUcgGCCg -3'
miRNA:   3'- -GCCauagUUCCGGC------------UGUGGUUCA--UGG- -5'
26591 5' -51.1 NC_005357.1 + 7183 0.71 0.6068
Target:  5'- uCGGauUCGGGGgCGACGCUggGcuUGCCa -3'
miRNA:   3'- -GCCauAGUUCCgGCUGUGGuuC--AUGG- -5'
26591 5' -51.1 NC_005357.1 + 8544 0.68 0.774494
Target:  5'- aGGUAUCGcAGGCCG-CGCUcg--ACCu -3'
miRNA:   3'- gCCAUAGU-UCCGGCuGUGGuucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 8797 0.66 0.877312
Target:  5'- uGG-GUC--GGCCG-CGCCGgucAGUACCg -3'
miRNA:   3'- gCCaUAGuuCCGGCuGUGGU---UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 10311 0.7 0.642304
Target:  5'- gGGcGUCGAGGUCGGCagcgGCCAGGgcguugagcaacgcgGCCg -3'
miRNA:   3'- gCCaUAGUUCCGGCUG----UGGUUCa--------------UGG- -5'
26591 5' -51.1 NC_005357.1 + 13399 0.71 0.617098
Target:  5'- gGGUAUCGAccuGGCCGaagcgcgGCGCCuGGUcGCCu -3'
miRNA:   3'- gCCAUAGUU---CCGGC-------UGUGGuUCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 13828 0.73 0.495201
Target:  5'- cCGGU-UCAAGGaacugaCCGACACCAcGcUGCCg -3'
miRNA:   3'- -GCCAuAGUUCC------GGCUGUGGUuC-AUGG- -5'
26591 5' -51.1 NC_005357.1 + 14105 0.72 0.516904
Target:  5'- aGGccAUCGAGuCCGACGCCGAGcgcGCCg -3'
miRNA:   3'- gCCa-UAGUUCcGGCUGUGGUUCa--UGG- -5'
26591 5' -51.1 NC_005357.1 + 14908 0.74 0.432808
Target:  5'- gCGGcgAUCugcugcuGGCCGGCcUCAAGUGCCg -3'
miRNA:   3'- -GCCa-UAGuu-----CCGGCUGuGGUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 15518 0.67 0.805108
Target:  5'- gCGGUGaugggC-AGGCCGAUAUgCAcGGUGCCg -3'
miRNA:   3'- -GCCAUa----GuUCCGGCUGUG-GU-UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 16349 0.68 0.763954
Target:  5'- uGG-AUUGAGGCCcGCcCCGAGUucGCCg -3'
miRNA:   3'- gCCaUAGUUCCGGcUGuGGUUCA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.